Browse Element(s) Details


OsAffx.3568.1.S1_at

Description tigr:9631.m04964
TID=OsAffx.3568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5080011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50780OsAffx.25668.1.S1_at11/113+28937553..28941017PHD-finger family protein, expressed
LOC_Os03g50790OsAffx.25669.1.S1_at11/113+28945569..28948142hypothetical protein
LOC_Os03g50800OsAffx.3568.1.S1_at11/113+28957190..28957596hypothetical protein
LOC_Os03g50810Os.4149.2.S1_x_at10/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50810Os.4149.1.S1_at2/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50820OsAffx.25670.1.S1_at11/113+28977485..28979935Cytochrome b561 family protein, expressed
LOC_Os03g50830OsAffx.13449.1.S1_at11/113+28980747..28981421hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3568.1.S1_at--390--9511Chr03:28957509..28957533 (25 bp)
TCTCTCCCGTGGCAGGCAGCGAGGG
LOC_Os03g50800
OsAffx.3568.1.S1_at--478--8711Chr03:28957342..28957366 (25 bp)
TGTCCTCCTCGTCGACACGAGCAAT
LOC_Os03g50800
OsAffx.3568.1.S1_at--1077--1571Chr03:28957307..28957331 (25 bp)
AGCTCTTCAGCGAGCCATTTCCCGG
LOC_Os03g50800
OsAffx.3568.1.S1_at--705--1631Chr03:28957299..28957323 (25 bp)
AGCGAGCCATTTCCCGGCACGGCGT
LOC_Os03g50800
OsAffx.3568.1.S1_at--589--3571Chr03:28957292..28957316 (25 bp)
CATTTCCCGGCACGGCGTGGCTGCT
LOC_Os03g50800
OsAffx.3568.1.S1_at--966--3931Chr03:28957280..28957304 (25 bp)
CGGCGTGGCTGCTCCTGCGCGACTT
LOC_Os03g50800
OsAffx.3568.1.S1_at--736--9151Chr03:28957265..28957289 (25 bp)
TGCGCGACTTCCCACTGGTGTTGAT
LOC_Os03g50800
OsAffx.3568.1.S1_at--1140--4091Chr03:28957261..28957285 (25 bp)
CGACTTCCCACTGGTGTTGATGCGA
LOC_Os03g50800
OsAffx.3568.1.S1_at--13--2432Chr11:28129963..28129983 (21 bp)
AAAACACACACTGGTCTGGAAGGTC
NONE
OsAffx.3568.1.S1_at--126--2191Chr03:28957231..28957255 (25 bp)
ACACACTGGTCTGGAAGGTCTGCTT
LOC_Os03g50800
OsAffx.3568.1.S1_at--642--3331Chr03:28957228..28957252 (25 bp)
CACTGGTCTGGAAGGTCTGCTTAAC
LOC_Os03g50800
Target Sequence 
TCTCTCCCGTGGCAGGCAGCGAGGGCCGGAGCGGCGGCAGGCGGAGACGGCGGCGAGCGGCGGAGACGTGGGAGTGGCGG
CGGCAGGCATTGGATCGGCGACGGCGGCCTCGGGAACCGCATCCTTGCTGCCGCGTCGGCCTTCCTCTACGCTGTGCTCA
CCGCCCGTGTCCTCCTCGTCGACACGAGCAATGAGATGGACGAGCTCTTCAGCGAGCCATTTCCCGGCACGGCGTGGCTG
CTCCTGCGCGACTTCCCACTGGTGTTGATGCGAAAAACACACACTGGTCTGGAAGGTCTGCTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis