Browse Element(s) Details


OsAffx.25670.1.S1_at

Description tigr:9631.m04966
TID=OsAffx.25670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytochrome protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5082011/11Cytochrome b561 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50800OsAffx.3568.1.S1_at11/113+28957190..28957596hypothetical protein
LOC_Os03g50810Os.4149.2.S1_x_at10/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50810Os.4149.1.S1_at2/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50820OsAffx.25670.1.S1_at11/113+28977485..28979935Cytochrome b561 family protein, expressed
LOC_Os03g50830OsAffx.13449.1.S1_at11/113+28980747..28981421hypothetical protein
LOC_Os03g50850Os.11669.1.S1_at10/113+28988496..28994737Splicing factor 3A subunit 3, putative, expressed
LOC_Os03g50860Os.51112.1.S1_at11/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50860OsAffx.5571.1.S1_at7/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016021cellular_componentintegral to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0008805molecular_functioncarbon-monoxide oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25670.1.S1_at--1048--8911Chr03:28977573..28977597 (25 bp)
TGACCACCGCGGTGCTCATGCTGGT
LOC_Os03g50820
OsAffx.25670.1.S1_at--217--1531Chr03:28977648..28977838 (25 bp)
AGCAGATCTTCAACGTCCATCCATT
LOC_Os03g50820
OsAffx.25670.1.S1_at--394--7271Chr03:28977828..28977852 (25 bp)
GTCCATCCATTCGTGATGTGCTGGG
LOC_Os03g50820
OsAffx.25670.1.S1_at--869--5951Chr03:28979473..28979493 (21 bp)
GAGAAGCTATACTGGCGTACACGAC
LOC_Os03g50820
OsAffx.25670.1.S1_at--576--8371Chr03:28979482..28979506 (25 bp)
GGCGTACACGACGATCCCGATGGAT
LOC_Os03g50820
OsAffx.25670.1.S1_at--947--6311Chr03:28979494..28979518 (25 bp)
GATCCCGATGGATCACCGGACGCAG
LOC_Os03g50820
OsAffx.25670.1.S1_at--176--831Chr03:28979501..28979525 (25 bp)
ATGGATCACCGGACGCAGAAGATGG
LOC_Os03g50820
OsAffx.25670.1.S1_at--680--411Chr03:28979564..28979588 (25 bp)
ATCTTCGGCGTCTACGCCGCGTTCA
LOC_Os03g50820
OsAffx.25670.1.S1_at--749--9571Chr03:28979661..28979685 (25 bp)
TCTTCGGCCTCCAGTGGCTCTTCGG
LOC_Os03g50820
OsAffx.25670.1.S1_at--1067--1391Chr03:28979796..28979820 (25 bp)
AGACGGGACTCGTCCAGAAGAGCGC
LOC_Os03g50820
OsAffx.25670.1.S1_at--402--6231Chr03:28979840..28979864 (25 bp)
GAGGCCAAGCTCATCAACGTCACCG
LOC_Os03g50820
Target Sequence 
TGACCACCGCGGTGCTCATGCTGGTGTGGCTGCTGCACTTCCGCGGCGGCATCAACATCCAGTCCGACGACCCCGAGCAG
ATCTTCAACGTCCATCCATTCGTGATGTGCTGGGGGTTCATTCTTCTAATAGGAGAAGCTATACTGGCGTACACGACGAT
CCCGATGGATCACCGGACGCAGAAGATGGTGCACATGCTGGTGCACCTGGTGGCGCTCATCCTCGCCATCTTCGGCGTCT
ACGCCGCGTTCAAGTTCCACGACGCCGCCGTGGCGCCCGACCTCGTCTCCCTCCACTCCTGGCTCGGCATCCTCGCCGTC
GCCCTCTTCGGCCTCCAGTGGCTCTTCGGCTTCTTCGCCTTCTGGCTCCCGGGCACCCACGAGCGCACGCGCGCCGCCGC
CGCCCCCGCCCACGTCGCCGCCGGCCTCGCCATCTTCATGCTCGCCGTCTGCGCCGCCGAGACGGGACTCGTCCAGAAGA
GCGCCGCCGCCGCGTCCGCCGGCGAGGCCAAGCTCATCAACGTCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis