Browse Element(s) Details


Os.11669.1.S1_at

Description gb:AK069120.1
DB_XREF= gi:32979144
TID=Os.11669.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004K20, full insert sequence.
FL= gb:AK069120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5085010/11Splicing factor 3A subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50810Os.4149.2.S1_x_at10/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50810Os.4149.1.S1_at2/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50820OsAffx.25670.1.S1_at11/113+28977485..28979935Cytochrome b561 family protein, expressed
LOC_Os03g50830OsAffx.13449.1.S1_at11/113+28980747..28981421hypothetical protein
LOC_Os03g50850Os.11669.1.S1_at10/113+28988496..28994737Splicing factor 3A subunit 3, putative, expressed
LOC_Os03g50860Os.51112.1.S1_at11/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50860OsAffx.5571.1.S1_at7/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50870Os.16884.1.S1_at10/113+29014165..29016831expressed protein
LOC_Os03g50880Os.11814.1.S1_at9/113+29016928..29020662Anthranilate synthase component II, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11669.1.S1_at--555--9791NONE
TAAGCTCCATGGTCTTGGTCAGGAA
NONE
Os.11669.1.S1_at--1116--5731Chr03:28989186..28989210 (25 bp)
GACGGGCTTATGAGCGGCATTTCAA
LOC_Os03g50850
Os.11669.1.S1_at--350--4951Chr03:28989170..28989194 (25 bp)
GCATTTCAAGGAGTGGCGCCATCAG
LOC_Os03g50850
Os.11669.1.S1_at--741--6351Chr03:28989140..28989164 (25 bp)
GATGCGCTGTCTTGGAATTCCTAAT
LOC_Os03g50850
Os.11669.1.S1_at--148--391Chr03:28988899..28989121 (25 bp)
ATCACATCCATCCAGGAGGCAAAAG
LOC_Os03g50850
Os.11669.1.S1_at--1028--1091Chr03:28988689..28988713 (25 bp)
AGTGGTTGGCCATTTGTTCTATTGA
LOC_Os03g50850
Os.11669.1.S1_at--1105--3671Chr03:28988671..28988695 (25 bp)
CTATTGAACTTCGTTGACCTCTGGG
LOC_Os03g50850
Os.11669.1.S1_at--431--5831Chr03:28988656..28988680 (25 bp)
GACCTCTGGGTAGTTGTAGCACTCG
LOC_Os03g50850
Os.11669.1.S1_at--1159--5091Chr03:28988638..28988662 (25 bp)
GCACTCGATACTTGTAGCACCATGG
LOC_Os03g50850
Os.11669.1.S1_at--620--7691Chr03:28988615..28988639 (25 bp)
GGGTACTCCATTGCTCAAATGTTTC
LOC_Os03g50850
Os.11669.1.S1_at--148--3191Chr03:28988522..28988546 (25 bp)
CAATCCAGGGTTAAATCGCCATTGT
LOC_Os03g50850
Target Sequence 
TAAGCTCCATGGTCTTGGTCAGGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCTTATGAGC
GGCATTTCAAGGAGTGGCGCCATCAGCACGGGATGCGCTGTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACA
TCCATCCAGGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAGTGGCGGCCAGACCTAGAAGA
AGAGTACGAAGATCAGGAGGGAAATATCTACAACAAGAAGACCTACACTGATCTGCAGCGCCAGGGCCTGATTTAGAATC
CCTGATGCGATCCTAACATTTTGGCNCCTATGGGCTGCTGCTGAAGTGGTTGGCCATTTGTTCTATTGAACTTCGTTGAC
CTCTGGGTAGTTGTAGCACTCGATACTTGTAGCACCATGGGTACTCCATTGCTCAAATGTTTCTTTTCTACTACATGGTA
TATTGCACTATATCCCTGTACCCTGTTTGACCATCTGGTATACTGTTTGCACAATCCAGGGTTAAATCGCCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis