Browse Element(s) Details


Os.11814.1.S1_at

Description gb:AK105178.1
DB_XREF= gi:32990387
TID=Os.11814.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-C08, full insert sequence.
FL= gb:AK105178.1 gb:AB116722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g508809/11Anthranilate synthase component II, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50850Os.11669.1.S1_at10/113+28988496..28994737Splicing factor 3A subunit 3, putative, expressed
LOC_Os03g50860Os.51112.1.S1_at11/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50860OsAffx.5571.1.S1_at7/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50870Os.16884.1.S1_at10/113+29014165..29016831expressed protein
LOC_Os03g50880Os.11814.1.S1_at9/113+29016928..29020662Anthranilate synthase component II, putative, expressed
LOC_Os03g50890Os.3420.1.S1_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50890Os.3420.1.S1_s_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50900Os.51810.1.S1_at11/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50900Os.19803.2.S1_at1/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50920OsAffx.13451.1.S1_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50920OsAffx.13451.1.S1_x_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009618biological_processresponse to pathogenic bacteria
GO:0004049molecular_functionanthranilate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11814.1.S1_at--115--2911Chr03:29018363..29018387 (25 bp)
AAGGTTGTTCGTTCTCCTTATGGAG
LOC_Os03g50880
Os.11814.1.S1_at--369--8151Chr03:29018291..29018315 (25 bp)
GGAACACTGTTTTCTGGTCTCCCAA
LOC_Os03g50880
Os.11814.1.S1_at--432--4671Chr03:29017987..29018011 (25 bp)
GCGGGAAGATACCACAGCCTTGTAA
LOC_Os03g50880
Os.11814.1.S1_at--484--5311Chr03:29017958..29017982 (25 bp)
GAAGGATAGCTTCCCACATGATGCC
LOC_Os03g50880
Os.11814.1.S1_at--854--5771Chr03:29017912..29017936 (25 bp)
GACGATGGGCTGATCATGGCTGCTC
LOC_Os03g50880
Os.11814.1.S1_at--246--9871NONE
TACAGGGTGTGCAGTTCCATCCAGA
NONE
Os.11814.1.S1_at--763--8431Chr03:29017171..29017195 (25 bp)
GGCCTTGAATTGCTTACCGTGATCC
LOC_Os03g50880
Os.11814.1.S1_at--704--7391NONE
GTGATCCACTTTGAGTCGAGGTTCT
NONE
Os.11814.1.S1_at--1018--311Chr03:29017020..29017044 (25 bp)
ATACGTCTTGGTTTTCTGTCGGACA
LOC_Os03g50880
Os.11814.1.S1_at--543--3871Chr03:29017005..29017029 (25 bp)
CTGTCGGACATGCAAACTTCTACGT
LOC_Os03g50880
Os.11814.1.S1_at--951--6731Chr03:29016965..29016989 (25 bp)
GTTCAGTTTGTATCTCAGGCTCACA
LOC_Os03g50880
Target Sequence 
AAGGTTGTTCGTTCTCCTTATGGAGTTGTGCATGGGAAAGGATCCCTTGTTCACTATGAGGAGAAACTTGATGGAACACT
GTTTTCTGGTCTCCCAAACCCATTCCAAGCGGGAAGATACCACAGCCTTGTAATTGAGAAGGATAGCTTCCCACATGATG
CCCTGGAAATTACTGCTTGGACAGACGATGGGCTGATCATGGCTGCTCGCCACAGGAAGTACAAACATATACAGGGTGTG
CAGTTCCATCCAGAGAGCATCATAACAACAGAAGGGAGGCTCATGGTCAAGAATTTCATCAAGATTATTGAAGGCTACGA
GGCCTTGAATTGCTTACCGTGATCCACTTTGAGTCGAGGTTCTGGTACATGTATTGATTGATACGGCTATCACAGGATGT
AAATCATATTAAATAGTCCTAAAAAACATCTTCAATGAAAATTACACTGCAAAGCTGTACGATCAACTCTGTATACGTCT
TGGTTTTCTGTCGGACATGCAAACTTCTACGTCCTATATTATCAGTTGTTCAGTTTGTATCTCAGGCTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis