Browse Element(s) Details


Os.16884.1.S1_at

Description gb:AK099485.1
DB_XREF= gi:32984694
TID=Os.16884.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026C05, full insert sequence.
FL= gb:AK060573.1 gb:AK099485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5087010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50850Os.11669.1.S1_at10/113+28988496..28994737Splicing factor 3A subunit 3, putative, expressed
LOC_Os03g50860Os.51112.1.S1_at11/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50860OsAffx.5571.1.S1_at7/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50870Os.16884.1.S1_at10/113+29014165..29016831expressed protein
LOC_Os03g50880Os.11814.1.S1_at9/113+29016928..29020662Anthranilate synthase component II, putative, expressed
LOC_Os03g50890Os.3420.1.S1_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50890Os.3420.1.S1_s_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50900Os.51810.1.S1_at11/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50900Os.19803.2.S1_at1/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50920OsAffx.13451.1.S1_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50920OsAffx.13451.1.S1_x_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010224biological_processresponse to UV-B
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16884.1.S1_at--849--2151Chr03:29016281..29016305 (25 bp)
ACACCTGAAGGCACAGTCGATTCTT
LOC_Os03g50870
Os.16884.1.S1_at--789--6211Chr03:29016359..29016383 (25 bp)
GAGGCTGTTACTTTTGGATCCTTCC
LOC_Os03g50870
Os.16884.1.S1_at--1159--7951Chr03:29016374..29016398 (25 bp)
GGATCCTTCCTTTGGGATGTTGAGA
LOC_Os03g50870
Os.16884.1.S1_at--16--5891Chr03:29016397..29016421 (25 bp)
GAGCTTTGTGGACACCAGGTACCAT
LOC_Os03g50870
Os.16884.1.S1_at--308--1711Chr03:29016410..29016434 (25 bp)
ACCAGGTACCATTTTGTGGCCAACT
LOC_Os03g50870
Os.16884.1.S1_at--926--6531Chr03:29016567..29016591 (25 bp)
GATTTTTACACAGTTTTCGGGCATA
LOC_Os03g50870
Os.16884.1.S1_at--172--2991Chr03:29016626..29016650 (25 bp)
AATGTGCAGCTGTTAGTTCCTGGTA
LOC_Os03g50870
Os.16884.1.S1_at--946--10651Chr03:29016642..29016666 (25 bp)
TTCCTGGTAACACTTGGGCTGCTTG
LOC_Os03g50870
Os.16884.1.S1_at--72--8212Chr07:6005542..6005627 (25 bp)
GGAATCCTAGCTAGCTCTAGTTCAA
NONE
Os.16884.1.S1_at--284--3311NONE
CACAGATTTTTTGGCCCTTCATACT
NONE
Os.16884.1.S1_at--269--331Chr03:29016772..29016795 (24 bp)
ATACTGCTTTCTTTTGTTCAATAAC
LOC_Os03g50870
Target Sequence 
ACACCTGAAGGCACAGTCGATTCTTCCAAGGATGAACATGTCAGGATAAGTTTCGCAGGGTTGAGAAGGCTGATCTTAGA
GGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCATTTTGTGGCCAACTAGTTGA
TCCTACAAAGTTTCATCCCAGNTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGTGTATGGGTTTCAATGAAGACTCTT
TGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGATTTTTACACAGTTTTCGGGCATATAGCTTCAA
TGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACACTTGGGCTGCTTGGGCCTTGGGTGATG
TATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTACCACAGATTTT
TTGGCCCTTCATACTGCTTTCTTTTGTTCAATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis