Browse Element(s) Details


Os.4149.1.S1_at

Description gb:AK066295.1
DB_XREF= gi:32976313
TID=Os.4149.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4149 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for leucine rich repeat receptor-like kinase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060B13, full insert sequence.
FL= gb:AK066295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g508102/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50780OsAffx.25668.1.S1_at11/113+28937553..28941017PHD-finger family protein, expressed
LOC_Os03g50790OsAffx.25669.1.S1_at11/113+28945569..28948142hypothetical protein
LOC_Os03g50800OsAffx.3568.1.S1_at11/113+28957190..28957596hypothetical protein
LOC_Os03g50810Os.4149.2.S1_x_at10/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50810Os.4149.1.S1_at2/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50820OsAffx.25670.1.S1_at11/113+28977485..28979935Cytochrome b561 family protein, expressed
LOC_Os03g50830OsAffx.13449.1.S1_at11/113+28980747..28981421hypothetical protein
LOC_Os03g50850Os.11669.1.S1_at10/113+28988496..28994737Splicing factor 3A subunit 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0007165biological_processsignal transduction
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005576cellular_componentextracellular region
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4149.1.S1_at--47--8191Chr03:28965374..28965398 (25 bp)
GGAAGTTTGCAAATTTGCTAACTGT
LOC_Os03g50810
Os.4149.1.S1_at--866--9071Chr03:28965359..28965383 (25 bp)
TGCTAACTGTTCTGTTCTGCCATAA
LOC_Os03g50810
Os.4149.1.S1_at--746--6291Chr03:28965218..28965242 (25 bp)
GATGATCATGATTGTACCAGAACCA
NONE
Os.4149.1.S1_at--170--3511Chr03:28965212..28965236 (25 bp)
CATGATTGTACCAGAACCATCTCAA
NONE
Os.4149.1.S1_at--294--8751Chr03:28965206..28965230 (25 bp)
TGTACCAGAACCATCTCAATTATTG
NONE
Os.4149.1.S1_at--123--5431Chr03:28965199..28965223 (25 bp)
GAACCATCTCAATTATTGGAGACCG
NONE
Os.4149.1.S1_at--74--3751Chr03:28965192..28965216 (25 bp)
CTCAATTATTGGAGACCGTGGTCAG
NONE
Os.4149.1.S1_at--11--1391Chr03:28965180..28965204 (25 bp)
AGACCGTGGTCAGGGCGTCAGGCCG
NONE
Os.4149.1.S1_at--1075--7111Chr03:28965164..28965188 (25 bp)
GTCAGGCCGTCTCCTAACTGTCAAA
NONE
Os.4149.1.S1_at--770--8411Chr03:28965160..28965184 (25 bp)
GGCCGTCTCCTAACTGTCAAAATTA
NONE
Os.4149.1.S1_at--602--4011Chr03:28965157..28965181 (25 bp)
CGTCTCCTAACTGTCAAAATTATTG
NONE
Target Sequence 
GGAAGTTTGCAAATTTGCTAACTGTTCTGTTCTGCCATAATTCTGAGCTTAAAACAGGAGCGGTGAAGGGCTGCTGGGCT
GTATCAACACTACTCCCTGCTCCTTAACATCATCTCAGTTGTAGTCATTGTTGCTACTGTATTCTTTTAGTTCTATGATG
ATCATGATTGTACCAGAACCATCTCAATTATTGGAGACCGTGGTCAGGGCGTCAGGCCGTCTCCTAACTGTCAAAATTAT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis