Browse Element(s) Details


OsAffx.25669.1.S1_at

Description tigr:9631.m04963
TID=OsAffx.25669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5079011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50740Os.26446.1.S1_a_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.1.S1_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.2.S1_at10/113+28913493..28924448expressed protein
LOC_Os03g50760NANA3+28926417..28929209EF hand family protein
LOC_Os03g50780OsAffx.25668.1.S1_at11/113+28937553..28941017PHD-finger family protein, expressed
LOC_Os03g50790OsAffx.25669.1.S1_at11/113+28945569..28948142hypothetical protein
LOC_Os03g50800OsAffx.3568.1.S1_at11/113+28957190..28957596hypothetical protein
LOC_Os03g50810Os.4149.2.S1_x_at10/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50810Os.4149.1.S1_at2/113+28965228..28969208Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25669.1.S1_at--272--6891Chr03:28947577..28947601 (25 bp)
GTATTTGCTCTGTATGCGGTGCATT
LOC_Os03g50790
OsAffx.25669.1.S1_at--911--9351Chr03:28947384..28947408 (25 bp)
TCGCAAGGGACGATGACGCCCCAAA
LOC_Os03g50790
OsAffx.25669.1.S1_at--847--6011Chr03:28947300..28947397 (25 bp)
GATGACGCCCCAAAGGGTCTTAGGT
LOC_Os03g50790
OsAffx.25669.1.S1_at--324--3591Chr03:28947282..28947306 (25 bp)
CTTAGGTTAATTCTTGTCGCCGCAC
LOC_Os03g50790
OsAffx.25669.1.S1_at--388--6751Chr03:28947236..28947260 (25 bp)
GTTACCTCGCCGTGAAAAACTCTGG
LOC_Os03g50790
OsAffx.25669.1.S1_at--169--7631Chr03:28947212..28947236 (25 bp)
GGGAAAAGCTCGTGCCTCGACAAGA
LOC_Os03g50790
OsAffx.25669.1.S1_at--896--6211Chr03:28947170..28947194 (25 bp)
GAGGCGACCAAGTCAAGATCGACAA
LOC_Os03g50790
OsAffx.25669.1.S1_at--900--7631Chr03:28945684..28945882 (25 bp)
GGGAGACGAGTTCGATCTCGACTCT
LOC_Os03g50790
OsAffx.25669.1.S1_at--877--4031Chr03:28945672..28945695 (24 bp)
CGATCTCGACTCTGTTTGCAAAGAA
LOC_Os03g50790
OsAffx.25669.1.S1_at--654--2691Chr03:28945618..28945642 (25 bp)
AAGCTCCATGGAAGGCGAGTCCGGT
LOC_Os03g50790
OsAffx.25669.1.S1_at--579--7251Chr03:28945600..28945624 (25 bp)
GTCCGGTGGCAATCGAGTCTCAGTA
LOC_Os03g50790
Target Sequence 
GTATTTGCTCTGTATGCGGTGCATTGCAACTACAGGGGCAGGTTGGGTGGAGGTGGAGGTGGAGGGGGAGGGGGAGGAGG
AGGCGATGTTGGTGGAGATGGAGGAGGGGGAGGAGATGGTAATGTCGGTGGAGGTGGAGGAGGTGGAGGGGGAGGAGGAG
GCGGCGGAGGTGGAGGAGGAGGAGGCGATGGCGTCGCAAGGGACGATGACGCCCCAAAGGGTCTTAGGTTAATTCTTGTC
GCCGCACCTTCTTCCATGCCGTGGCCGCGTTACCTCGCCGTGAAAAACTCTGGGGAAAAGCTCGTGCCTCGACAAGACGG
AGGCGGCGGAGGGGGAGGCGACCAAGTCAAGATCGACAAGCTCCGCACCGCCGCCGGCGAGTTCGTCTCACAGAAGAGCA
GCTCGGTGTTTGGCAAGAAGAAGGTCGAGCCCGTGGTCAAGGATGCTGCAGTTCCAGGGGAGACGAGTTCGATCTCGACT
CTGTTTGCAAAGAAGAATGTCGGGGCCGTCTTGATGGATAAAGAAGCTCCATGGAAGGCGAGTCCGGTGGCAATCGAGTC
TCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis