Browse Element(s) Details


Os.26446.2.S1_at

Description gb:AK071327.1
DB_XREF= gi:32981350
TID=Os.26446.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023089C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089C05, full insert sequence.
FL= gb:AK071327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5074010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50670Os.48948.1.S1_x_at9/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670Os.48948.1.S1_at7/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670OsAffx.26155.1.S1_x_at7/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50670OsAffx.22848.3.S1_x_at1/113+28880940..28889211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g50690NANA3+28892740..28893924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g50710NANA3+28903514..28904069hypothetical protein
LOC_Os03g50720OsAffx.25664.1.S1_at5/113+28906568..28907690hypothetical protein
LOC_Os03g50730Os.49136.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.39929.1.A1_s_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730OsAffx.25665.1.S1_at11/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50730Os.49372.1.S1_at1/113+28908262..28913540Eukaryotic membrane protein family protein, expressed
LOC_Os03g50740Os.26446.1.S1_a_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.1.S1_at11/113+28913493..28924448expressed protein
LOC_Os03g50740Os.26446.2.S1_at10/113+28913493..28924448expressed protein
LOC_Os03g50760NANA3+28926417..28929209EF hand family protein
LOC_Os03g50780OsAffx.25668.1.S1_at11/113+28937553..28941017PHD-finger family protein, expressed
LOC_Os03g50790OsAffx.25669.1.S1_at11/113+28945569..28948142hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26446.2.S1_at--81--7031NONE
GTACATTCACCAGGAATCGCTTAAT
NONE
Os.26446.2.S1_at--855--8131Chr03:28913762..28913786 (25 bp)
GGAATCGCTTAATACGGCCTAACCG
LOC_Os03g50740
Os.26446.2.S1_at--641--8411Chr03:28913747..28913771 (25 bp)
GGCCTAACCGTGGTGGGATTACATT
LOC_Os03g50740
Os.26446.2.S1_at--427--31Chr03:28913725..28913749 (25 bp)
ATTGGACGCAATTACTTCAGAACCG
LOC_Os03g50740
Os.26446.2.S1_at--110--2371Chr03:28913697..28913721 (25 bp)
AAACCAGCTAAACTTTGGACGCAAT
LOC_Os03g50740
Os.26446.2.S1_at--511--10231Chr03:28913684..28913708 (25 bp)
TTTGGACGCAATTACTTCAGAACCG
LOC_Os03g50740
Os.26446.2.S1_at--1089--4831Chr03:28913650..28913674 (25 bp)
GCTAAACTACTTGCATAAGCCTGTA
LOC_Os03g50740
Os.26446.2.S1_at--650--2251Chr03:28913625..28913649 (25 bp)
AAATACTGTGATCGGAACTTGGCAA
LOC_Os03g50740
Os.26446.2.S1_at--625--8171Chr03:28913612..28913636 (25 bp)
GGAACTTGGCAATCATTCTAAACAT
LOC_Os03g50740
Os.26446.2.S1_at--396--8971Chr03:28913584..28913608 (25 bp)
TGAAAATAATGCACACCACCATAGG
LOC_Os03g50740
Os.26446.2.S1_at--326--931Chr03:28913562..28913586 (25 bp)
AGGCACATGCATTTGCACACATGAG
LOC_Os03g50740
Target Sequence 
GTACATTCACCAGGAATCGCTTAATACGGCCTAACCGTGGTGGGATTACATTGGACGCAATTACTTCAGAACCGGTAAAA
CCAGCTAAACTTTGGACGCAATTACTTCAGAACCGGTAAAACCAGCTAAACTACTTGCATAAGCCTGTAAAATACTGTGA
TCGGAACTTGGCAATCATTCTAAACATCCATGAAAATAATGCACACCACCATAGGCACATGCATTTGCACACATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26446.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis