Browse Element(s) Details


OsAffx.26155.1.S1_x_at

Description tigr:9632.m02437
TID=OsAffx.26155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2596010/11hypothetical protein
LOC_Os04g253909/11expressed protein
LOC_Os03g506707/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g269105/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25910OsAffx.26152.1.S1_at9/114+15048475..15051271hypothetical protein
LOC_Os04g25920OsAffx.26219.1.S1_x_at11/114+15054085..15054714MADS-box family protein, putative
LOC_Os04g25920OsAffx.26219.1.S1_at11/114+15054085..15054714MADS-box family protein, putative
LOC_Os04g25930OsAffx.26219.1.S1_x_at10/114+15058087..15058716hypothetical protein
LOC_Os04g25930OsAffx.26219.1.S1_at10/114+15058087..15058716hypothetical protein
LOC_Os04g25940OsAffx.30013.5.S1_x_at3/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25940Os.56292.1.S1_x_at2/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25940Os.56292.1.S1_at1/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25950NANA4+15069324..15069965transposon protein, putative, unclassified
LOC_Os04g25960OsAffx.26155.1.S1_x_at10/114+15073435..15081899hypothetical protein
LOC_Os04g25960Os.48948.1.S1_x_at7/114+15073435..15081899hypothetical protein
LOC_Os04g25960Os.48948.1.S1_at6/114+15073435..15081899hypothetical protein
LOC_Os04g25970Os.47907.1.S1_at1/114+15083122..15084612Cytokinin-O-glucosyltransferase 2, putative
LOC_Os04g25980NANA4+15095733..15097211Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g25990Os.15069.1.S1_at7/114+15098228..15101561Protein GCD14, putative, expressed
LOC_Os04g26000Os.47463.1.S1_x_at5/114+15106115..15109815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26000Os.14491.2.S1_x_at4/114+15106115..15109815transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26155.1.S1_x_at--62--6233Chr10:13824388..13824507 (25 bp)
GAGGCCTGCTATGAAGATACAACCA
LOC_Os10g26910
OsAffx.26155.1.S1_x_at--378--5952Chr04:15079893..15079917 (25 bp)
GAGAATTGCAGCTTAGTCTGAACAA
LOC_Os04g25960
OsAffx.26155.1.S1_x_at--521--3253Chr04:15080437..15080461 (25 bp)
CAACCAGGAGTTGCCAGAGAATCGC
LOC_Os04g25960
OsAffx.26155.1.S1_x_at--244--7534Chr10:13825540..13825564 (25 bp)
GGGCCAATGTGGGAACAACTAAACA
LOC_Os10g26910
OsAffx.26155.1.S1_x_at--660--353Chr04:15081108..15081132 (25 bp)
ATAACCGTGTTGCAAGAGCTACTAT
LOC_Os04g25960
OsAffx.26155.1.S1_x_at--667--3193Chr04:15081168..15081192 (25 bp)
CAATGCTGGGAAGGGAGTGCTACAA
LOC_Os04g25960
OsAffx.26155.1.S1_x_at--736--6034Chr10:13825845..13825869 (25 bp)
GAGATGCTGAATTGTTCCGGCCGCA
LOC_Os10g26910
OsAffx.26155.1.S1_x_at--643--8791Chr04:15081231..15081255 (25 bp)
TGTTCCGGCCGCATAGAAATTTGAA
LOC_Os04g25960
OsAffx.26155.1.S1_x_at--827--5994Chr10:13825890..13825914 (25 bp)
GAGACGCTATTGGTCATTGCATTGC
LOC_Os10g26910
OsAffx.26155.1.S1_x_at--704--9594Chr10:13825903..13825927 (25 bp)
TCATTGCATTGCATGGCCATCCCAA
LOC_Os10g26910
OsAffx.26155.1.S1_x_at--1138--8411NONE
GGCCATCCCAACTAAAAATTGGCGA
NONE
Target Sequence 
GAGGCCTGCTATGAAGATACAACCAAGAATTGCTAGAGAATTGCAGCTTAGTCTGAACAAACATGCTAGGAAGGTACAAC
CAAGAATTGTTGAAGAATCTCAGCTTAATCATAACAGACATGATGGGATGGTGCAACCAGGAGTTGCCAGAGAATCGCAA
GTTAATCAAAATATGCATGTTACGAAGGGGGTACAGAAGCATATAGCCAGGTACAATAACAACAAGCCTACTAAAATTGA
AGGGGCCAATGTGGGAACAACTAAACATGCTAAGGTCAAAAGGGCAGCATTAGCTTGTGAAAATGTGGTTGGAAGGGATG
TCTTTCTTAAGAGAATTGTTCGTCCATATAACCGTGTTGCAAGAGCTACTATTCAAAGTCAAGACCCCTTAGAAATGGTC
GGAGGAACAATGCTGGGAAGGGAGTGCTACAAAGTAGTGATAGACAGTCTTATATGTGGAGATGCTGAATTGTTCCGGCC
GCATAGAAATTTGAACTATATTAGAGACGCTATTGGTCATTGCATTGCATGGCCATCCCAACTAAAAATTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26155.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis