Browse Element(s) Details


Os.15069.1.S1_at

Description gb:CB647414
DB_XREF= gi:29642407
DB_XREF=OSJNEb10F09.r
CLONE=OSJNEb10F09
TID=Os.15069.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15069 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568302.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2536011/11Protein GCD14, putative, expressed
LOC_Os04g259907/11Protein GCD14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25330Os.35344.3.S1_x_at9/114+14629749..14632498transposon protein, putative, Mutator sub-class
LOC_Os04g25330Os.35344.18.S1_x_at7/114+14629749..14632498transposon protein, putative, Mutator sub-class
LOC_Os04g25330OsAffx.22940.5.S1_x_at3/114+14629749..14632498transposon protein, putative, Mutator sub-class
LOC_Os04g25339NANA4+14639210..14639399NA
LOC_Os04g25350OsAffx.13978.1.S1_at3/114+14643039..14643257hypothetical protein
LOC_Os04g25350OsAffx.13978.1.S1_x_at3/114+14643039..14643257hypothetical protein
LOC_Os04g25360Os.15069.1.S1_at11/114+14650994..14654487Protein GCD14, putative, expressed
LOC_Os04g25370NANA4+14655426..14656856Cytokinin-O-glucosyltransferase 2, putative
LOC_Os04g25380Os.47907.1.S1_at1/114+14667889..14669379Cytokinin-O-glucosyltransferase 2, putative
LOC_Os04g25390Os.48948.1.S1_x_at10/114+14670867..14679132expressed protein
LOC_Os04g25390OsAffx.26155.1.S1_x_at9/114+14670867..14679132expressed protein
LOC_Os04g25390Os.48948.1.S1_at7/114+14670867..14679132expressed protein
LOC_Os04g25390Os.33708.2.S1_at1/114+14670867..14679132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15069.1.S1_at--1003--7452Chr04:14653922..14653946 (25 bp)
GTGTGCAACCCCATGTTCAGGTATT
LOC_Os04g25360
Os.15069.1.S1_at--838--2252Chr04:14653985..14654009 (25 bp)
AAATACTGTTATGGCCATTTGCTGC
LOC_Os04g25360
Os.15069.1.S1_at--140--3592Chr04:14654000..14654024 (25 bp)
CATTTGCTGCCATTGCTGATAGTCA
LOC_Os04g25360
Os.15069.1.S1_at--2--1072Chr04:14654028..14654052 (25 bp)
AGGGTCACCTGTACTGAACTGCATT
LOC_Os04g25360
Os.15069.1.S1_at--824--2552Chr04:14654044..14654068 (25 bp)
AACTGCATTTACCTGTACGTCGAGC
LOC_Os04g25360
Os.15069.1.S1_at--872--3892Chr04:14654068..14654092 (25 bp)
CTGTGGGCCTTGCATTTGTTGTAAT
LOC_Os04g25360
Os.15069.1.S1_at--429--6952Chr04:14654096..14654120 (25 bp)
GTAGAAGTATTTCCCAGAGTTCCTT
LOC_Os04g25360
Os.15069.1.S1_at--551--2591Chr04:14654208..14654232 (25 bp)
AACGCTCTTGTTTAACCTGGGCAAG
LOC_Os04g25360
Os.15069.1.S1_at--462--8651Chr04:14654233..14654257 (25 bp)
TGGGCAGGGCATGTTCGCATTTCAC
LOC_Os04g25360
Os.15069.1.S1_at--7--1911Chr04:14654256..14654280 (25 bp)
ACGTCTCCATGCCTTGCGCAAAAAA
LOC_Os04g25360
Os.15069.1.S1_at--817--3872Chr04:14654350..14654374 (25 bp)
CTGTTTGATTGATTAGCACCGCCTA
LOC_Os04g25360
Target Sequence 
GTGTGCAACCCCATGTTCAGGTATTCTCTCAAGATTGATTTGGAGATGATCATTCTTTTTCTGAAATACTGTTATGGCCA
TTTGCTGCCATTGCTGATAGTCAACCAGGGTCACCTGTACTGAACTGCATTTACCTGTACGTCGAGCTGTGGGCCTTGCA
TTTGTTGTAATGGTGTAGAAGTATTTCCCAGAGTTCCTTTTTAGGAGTACTTGAGGAGATATTGGGAGGAGTACTTGAGG
AGGTATTGGGAGGTATAAGATGCCATACTTCCTGAAGGACAGTAAAAACGCTCTTGTTTAACCTGGGCAAGTGGGCAGGG
CATGTTCGCATTTCACGTCTCCATGCCTTGCGCAAAAAAGAANTTCAAATATCTATCTTTTTTAANAAATGTGTTTTGAC
AGGATGCCGAAAAAAGGTGTGGTATGTTTCTGTTTGATTGATTAGCACCGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis