Browse Element(s) Details


Os.33708.2.S1_at

Description gb:AK099417.1
DB_XREF= gi:32984626
TID=Os.33708.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013006H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013006H18, full insert sequence.
FL= gb:AK099417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2439011/11expressed protein
LOC_Os04g253901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24360OsAffx.29328.1.S1_at9/118+14569922..14572334hypothetical protein
LOC_Os08g24370OsAffx.17126.1.S1_at11/118+14575515..14577065F-box domain containing protein
LOC_Os08g24380OsAffx.17127.1.S1_at11/118+14581809..14588483NB-ARC domain containing protein, expressed
LOC_Os08g24390Os.33708.1.S1_s_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.56276.1.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.33708.2.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24400Os.50132.1.S1_at11/118+14605752..14609430CRSP complex subunit 2, putative, expressed
LOC_Os08g24410Os.45957.4.S1_x_at6/118+14613329..14618665retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24420Os.8780.1.S1_at11/118+14619766..14626792expressed protein
LOC_Os08g24420Os.8780.1.S2_at11/118+14619766..14626792expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33708.2.S1_at--543--9751Chr08:14593289..14593313 (25 bp)
TAATATGCAAGTACCTCTGTTTTCT
LOC_Os08g24390
Os.33708.2.S1_at--239--1191Chr08:14593280..14593304 (25 bp)
AGTACCTCTGTTTTCTTATGCCATG
LOC_Os08g24390
Os.33708.2.S1_at--1050--10311Chr08:14593269..14593293 (25 bp)
TTTCTTATGCCATGTTTCTTTGTGT
LOC_Os08g24390
Os.33708.2.S1_at--838--1031Chr08:14593193..14593217 (25 bp)
AGGGAGATAGTTTTGGTTCAGCCAT
LOC_Os08g24390
Os.33708.2.S1_at--958--10231Chr08:14593182..14593206 (25 bp)
TTTGGTTCAGCCATGTAGATGATGA
LOC_Os08g24390
Os.33708.2.S1_at--909--5491Chr08:14593159..14593183 (25 bp)
GAACAGATCACTGTGTTACAATACA
LOC_Os08g24390
Os.33708.2.S1_at--1076--3691Chr08:14593114..14593138 (25 bp)
CCCTTTTTAAATTCCTGCAACGCAT
LOC_Os08g24390
Os.33708.2.S1_at--1131--9011Chr08:14593099..14593123 (25 bp)
TGCAACGCATGCACATCCATTGCAT
LOC_Os08g24390
Os.33708.2.S1_at--1158--2091Chr08:14593087..14593111 (25 bp)
ACATCCATTGCATGTTGAGTGCAGA
LOC_Os08g24390
Os.33708.2.S1_at--644--6111Chr08:14593071..14593095 (25 bp)
GAGTGCAGATTAGAACAAGCTTACA
LOC_Os08g24390
Os.33708.2.S1_at--206--10032Chr08:14593061..14593085 (25 bp)
TAGAACAAGCTTACAGTTGGACATG
LOC_Os08g24390
Target Sequence 
TAATATGCAAGTACCTCTGTTTTCTTATGCCATGTTTCTTTGTGTAAAATCCTTTTCTTCCCTTATAAACTAGAACAAAA
TCGTAATAACATGTGAAGGGAGATAGTTTTGGTTCAGCCATGTAGATGATGAACAGATCACTGTGTTACAATACAATATG
ACAGAAGTAAACAAACCCTTTTTAAATTCCTGCAACGCATGCACATCCATTGCATGTTGAGTGCAGATTAGAACAAGCTT
ACAGTTGGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33708.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis