Browse Element(s) Details


Os.56276.1.S1_at

Description gb:AK109737.1
DB_XREF= gi:32994946
TID=Os.56276.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C11, full insert sequence.
FL= gb:AK109737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2439011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24360OsAffx.29328.1.S1_at9/118+14569922..14572334hypothetical protein
LOC_Os08g24370OsAffx.17126.1.S1_at11/118+14575515..14577065F-box domain containing protein
LOC_Os08g24380OsAffx.17127.1.S1_at11/118+14581809..14588483NB-ARC domain containing protein, expressed
LOC_Os08g24390Os.33708.1.S1_s_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.56276.1.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.33708.2.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24400Os.50132.1.S1_at11/118+14605752..14609430CRSP complex subunit 2, putative, expressed
LOC_Os08g24410Os.45957.4.S1_x_at6/118+14613329..14618665retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24420Os.8780.1.S1_at11/118+14619766..14626792expressed protein
LOC_Os08g24420Os.8780.1.S2_at11/118+14619766..14626792expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56276.1.S1_at--1138--9631Chr08:14597714..14597738 (25 bp)
TCAGGTTTGATGCTGTACAAGTATC
LOC_Os08g24390
Os.56276.1.S1_at--568--6871Chr08:14597694..14597718 (25 bp)
GTATCTTGTACCTCTAATCTAATTG
LOC_Os08g24390
Os.56276.1.S1_at--378--9911Chr08:14597662..14597686 (25 bp)
TACTCACTTAGCTCGCATGATGCGA
LOC_Os08g24390
Os.56276.1.S1_at--820--1011Chr08:14597444..14597468 (25 bp)
AGGTTAGTTCTTGGAGCAGTTGCTT
LOC_Os08g24390
Os.56276.1.S1_at--260--7051Chr08:14597413..14597437 (25 bp)
GTAAACTGTCAATGCTATGCCATGA
LOC_Os08g24390
Os.56276.1.S1_at--612--6411Chr08:14597390..14597414 (25 bp)
GATCTTATTCTTTTTTCGGTTATAT
LOC_Os08g24390
Os.56276.1.S1_at--742--7031Chr08:14597335..14597359 (25 bp)
GTAACTTTTGGAGCAATGTTCTTCT
LOC_Os08g24390
Os.56276.1.S1_at--339--6731Chr08:14597318..14597342 (25 bp)
GTTCTTCTAAAACAGGTGTCCTGCC
LOC_Os08g24390
Os.56276.1.S1_at--164--1051Chr08:14597305..14597329 (25 bp)
AGGTGTCCTGCCATTAACTGTGGAG
LOC_Os08g24390
Os.56276.1.S1_at--403--8011Chr08:14597284..14597308 (25 bp)
GGAGGGACTCCAGTACTAACTTATT
LOC_Os08g24390
Os.56276.1.S1_at--646--9814Chr08:1065215..1065544 (25 bp)
TAGAACTTAGAAGATACTCCCTCCG
NONE
Target Sequence 
TCAGGTTTGATGCTGTACAAGTATCTTGTACCTCTAATCTAATTGTTTAAGCTACTCACTTAGCTCGCATGATGCGATTT
ATGAAACAAAATTTTACAGTTTGAGCAAATTTTTAGAGATGACATCTTAGGAAAATATAGATTATTTTTAATGCTGTAAT
GGAAATCTTAGCATTATTTTATTACTTTACAGACTGTTTCTTGTTCAAAATGCCGATATCAGTACGAACTATTTTCTGGA
GATATCATGAGCATCGAGTCTGAAGAAGTTAGGTTAGTTCTTGGAGCAGTTGCTTGGAGTTGTAAACTGTCAATGCTATG
CCATGATCTTATTCTTTTTTCGGTTATATTTGTAGCTATGGATTATGGTGTTGTTTCTAGTAACTTTTGGAGCAATGTTC
TTCTAAAACAGGTGTCCTGCCATTAACTGTGGAGGGACTCCAGTACTAACTTATTTTGTTAGAACTTAGAAGATACTCCC
TCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis