Browse Element(s) Details


Os.8780.1.S1_at

Description gb:AK108356.1
DB_XREF= gi:32993565
TID=Os.8780.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C05, full insert sequence.
FL= gb:AK108356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2442011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24390Os.33708.1.S1_s_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.56276.1.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.33708.2.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24400Os.50132.1.S1_at11/118+14605752..14609430CRSP complex subunit 2, putative, expressed
LOC_Os08g24410Os.45957.4.S1_x_at6/118+14613329..14618665retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24420Os.8780.1.S1_at11/118+14619766..14626792expressed protein
LOC_Os08g24420Os.8780.1.S2_at11/118+14619766..14626792expressed protein
LOC_Os08g24434Os.54383.1.S1_at11/118+14627447..14633423expressed protein
LOC_Os08g24450OsAffx.30966.3.A1_x_at11/118+14635916..14643574AT hook motif-containing protein, putative
LOC_Os08g24460OsAffx.19287.2.S1_s_at11/118+14644658..14646629hypothetical protein
LOC_Os08g24470OsAffx.31415.1.S1_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24470OsAffx.31415.2.S1_s_at11/118+14647145..14650016hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008284biological_processpositive regulation of cell proliferation
GO:0045941biological_processpositive regulation of transcription
GO:0000119cellular_componentmediator complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8780.1.S1_at--707--2031Chr08:14625516..14625540 (25 bp)
ACTTTTGTACTTGATCAGGCCCTTG
LOC_Os08g24420
Os.8780.1.S1_at--981--6971Chr08:14625540..14625564 (25 bp)
GTACCCCACATGAGCATATCTGGTG
LOC_Os08g24420
Os.8780.1.S1_at--720--4931Chr08:14625570..14625594 (25 bp)
GCTTGGTTGCCATATTGTGTTTCTG
LOC_Os08g24420
Os.8780.1.S1_at--406--1271Chr08:14625620..14625644 (25 bp)
AGATAGTCACATTGCATTCCTTGCA
LOC_Os08g24420
Os.8780.1.S1_at--404--1631Chr08:14625660..14625684 (25 bp)
AGCGGCAGGGCTTGTTGGTTACAAC
LOC_Os08g24420
Os.8780.1.S1_at--733--5151Chr08:14625812..14625836 (25 bp)
GCAACTCAGCCTATTGCAGCTTAGA
LOC_Os08g24420
Os.8780.1.S1_at--521--1351Chr08:14625834..14625858 (25 bp)
AGAGATAGCCCAGTCTCTACTGGCT
LOC_Os08g24420
Os.8780.1.S1_at--147--8331Chr08:14625855..14625879 (25 bp)
GGCTCTGCCGCATCATGAAATGAAT
LOC_Os08g24420
Os.8780.1.S1_at--1018--871Chr08:14625915..14625939 (25 bp)
ATGGCCATGCCGAACGTGGTGTTCA
LOC_Os08g24420
Os.8780.1.S1_at--82--10231Chr08:14626032..14626056 (25 bp)
TATTGCCAGGCGAACATCTCATAAT
LOC_Os08g24420
Os.8780.1.S1_at--553--2531Chr08:14626076..14626100 (25 bp)
AACTAGTGTGGTGCTGACCTCAGTT
LOC_Os08g24420
Target Sequence 
ACTTTTGTACTTGATCAGGCCCTTGTACCCCACATGAGCATATCTGGTGGAGCTGCTTGGTTGCCATATTGTGTTTCTGT
GAGAGTAAGGTACACCTTTGGAGAAGATAGTCACATTGCATTCCTTGCAATGGATGGGAGCCATAGCGGCAGGGCTTGTT
GGTTACAACATGAGGATTGGGAGAGGTGTAAACAGAGGGTTTCCAGAGCAGTGGAGACTATGAATGGGTCCGCAGCAGTT
GGAGATATGAGCCAGGGAAGACTGAGGATGGTTGCTGAGATGGTTCAAAAGCAACTGCAACTCAGCCTATTGCAGCTTAG
AGATAGCCCAGTCTCTACTGGCTCTGCCGCATCATGAAATGAATATTTAGATNTCAACGGCGTTTATACTTTGGATAACA
TGGCCATGCCGAACGTGGTGTTCAGTACTGAACGGATGCAAAGATGTCTATATTTCAAGGCAATGTCTGATAGTGAATTT
TTTCAGCCAATATTCATAATTCTAGTGCCATAATTTTATTGCCAGGCGAACATCTCATAATTTTGTACAGTAATATTGGT
AACTAGTGTGGTGCTGACCTCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis