Browse Element(s) Details


OsAffx.31415.2.S1_s_at

Description tigr:9639.m01285
TID=OsAffx.31415.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1390011/11hypothetical protein
LOC_Os11g4090011/11hypothetical protein
LOC_Os08g2447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13880Os.18644.1.S1_at11/1111+7651028..7654757expressed protein
LOC_Os11g13880OsAffx.18835.1.S1_at9/1111+7651028..7654757expressed protein
LOC_Os11g13890OsAffx.18836.1.S1_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.12181.1.S1_s_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890OsAffx.18836.1.S1_x_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.37562.1.A1_x_at4/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13900OsAffx.31415.2.S1_s_at11/1111+7674147..7675351hypothetical protein
LOC_Os11g13910OsAffx.19287.2.S1_s_at11/1111+7675867..7677757hypothetical protein
LOC_Os11g13920OsAffx.30966.3.A1_x_at11/1111+7678841..7688349AT hook motif-containing protein, putative
LOC_Os11g13930OsAffx.18838.1.S1_at10/1111+7689853..7691892ZF-HD protein dimerisation region containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31415.2.S1_s_at--323--1273Chr08:14648011..14648184 (25 bp)
AGATAGACTGGTTGAAGCAGCAGGC
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--1016--2713Chr08:14648174..14648198 (25 bp)
AAGCAGCAGGCAGTGATTCAGTCAC
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--429--933Chr08:14648181..14648205 (25 bp)
AGGCAGTGATTCAGTCACCATGCTC
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--412--7113Chr08:14648194..14648218 (25 bp)
GTCACCATGCTCCTGCATAAATCAT
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--87--633Chr08:14648200..14648224 (25 bp)
ATGCTCCTGCATAAATCATCGGACG
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--1140--413Chr08:14648214..14648238 (25 bp)
ATCATCGGACGATCGTTGCAACCTA
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--1057--2533Chr08:14648233..14648257 (25 bp)
AACCTAAAGAGAGGATGGGCAACTT
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--683--5153Chr08:14648251..14648275 (25 bp)
GCAACTTTTGCAGCAACCAATGCCA
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--798--10733Chr08:14648258..14648282 (25 bp)
TTGCAGCAACCAATGCCATTCATCT
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--976--3813Chr08:14648281..14648305 (25 bp)
CTCCATTCAGTTTGCATCTTTCACT
LOC_Os08g24470
OsAffx.31415.2.S1_s_at--421--3453Chr08:14648288..14648312 (25 bp)
CAGTTTGCATCTTTCACTTCTACAA
LOC_Os08g24470
Target Sequence 
AGATAGACTGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAA
AGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31415.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis