Browse Element(s) Details


OsAffx.18836.1.S1_x_at

Description tigr:9639.m01283
TID=OsAffx.18836.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=chlorophyll ab-binding protein CP26 precursor - maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1389011/11Chlorophyll A-B binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13860Os.52720.1.S1_at11/1111+7639581..7645141Protein kinase domain containing protein, expressed
LOC_Os11g13870OsAffx.30964.1.S1_at11/1111+7646787..7647847uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g13880Os.18644.1.S1_at11/1111+7651028..7654757expressed protein
LOC_Os11g13880OsAffx.18835.1.S1_at9/1111+7651028..7654757expressed protein
LOC_Os11g13890OsAffx.18836.1.S1_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.12181.1.S1_s_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890OsAffx.18836.1.S1_x_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.37562.1.A1_x_at4/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13900OsAffx.31415.2.S1_s_at11/1111+7674147..7675351hypothetical protein
LOC_Os11g13910OsAffx.19287.2.S1_s_at11/1111+7675867..7677757hypothetical protein
LOC_Os11g13920OsAffx.30966.3.A1_x_at11/1111+7678841..7688349AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0015979biological_processphotosynthesis
GO:0009517cellular_componentPSII associated light-harvesting complex II
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0009783cellular_componentphotosystem II antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0042651cellular_componentthylakoid membrane
GO:0005198molecular_functionstructural molecule activity
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18836.1.S1_x_at--182--9111Chr11:7657087..7657111 (25 bp)
TGCTCGCTGATACTCACCGGAGATT
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--501--331Chr11:7657096..7657120 (25 bp)
ATACTCACCGGAGATTCGCCGGCGA
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--994--7951Chr11:7657137..7657161 (25 bp)
GGATCTGGAGGACAAGCTCCACCCA
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--37--1731Chr11:7657202..7657226 (25 bp)
ACCAGGCGGCGCTGCTGAAGGTGAA
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--984--7671Chr11:7657267..7657291 (25 bp)
GGGTTCTTCATCCAGGCCTACGTCA
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--665--9231Chr11:7657277..7657301 (25 bp)
TCCAGGCCTACGTCACCGGCGAGGG
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--1009--3131Chr11:7657509..7657533 (25 bp)
AATTATCGTCGAGTTGGGAGATGAA
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--737--9471Chr11:7657551..7657575 (25 bp)
TCTGATCTTCTGATAGGAAGGACCA
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--833--5971Chr11:7657595..7657619 (25 bp)
GAGAAATATTTGCTACCTGAGTAAA
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--879--4851Chr11:7657606..7657630 (25 bp)
GCTACCTGAGTAAATTGTCTCGAAG
LOC_Os11g13890
OsAffx.18836.1.S1_x_at--204--7171Chr11:7657622..7657646 (25 bp)
GTCTCGAAGTGGTTTTCATCATCGT
LOC_Os11g13890
Target Sequence 
TGCTCGCTGATACTCACCGGAGATTCGCCGGCGATGGCGATGGTGGTGCAGGATCTGGAGGACAAGCTCCACCCAGGTGG
CCCATTCGACCCGCTGGGGCTGGCGAGCGACCCGGACCAGGCGGCGCTGCTGAAGGTGAAGGAGATCAAGAACGGGCGGC
TGGCCATGTTCTCCATGCTGGGGTTCTTCATCCAGGCCTACGTCACCGGCGAGGGCCCCGTCGAGAACCTCTCCAAGCAC
CTCAGCGACCCCTTCGGCAACAACCTGCTCACCGTCATCTCCGGCGCCGCCGAGAGGACGCCCAGCCTGTAAACATCTCG
CCGCCGGCGACGCTGGCTGGCCTCAAGTTAATTTTAATCTTACCCGGGAAGAAGAAGGGAGGAGTTTGAGAAGGGTGGAA
GAATGTGTTAAATGTACGTGTAAATTATCGTCGAGTTGGGAGATGAATTTGAAAACCTGTTCATTCTGATCTTCTGATAG
GAAGGACCAAGTGTTTGGATTTGTGGCTGAGAAATATTTGCTACCTGAGTAAATTGTCTCGAAGTGGTTTTCATCATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18836.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis