Browse Element(s) Details


Os.18644.1.S1_at

Description gb:AK064219.1
DB_XREF= gi:32974237
TID=Os.18644.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F11, full insert sequence.
FL= gb:AK064219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1388011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13860Os.52720.1.S1_at11/1111+7639581..7645141Protein kinase domain containing protein, expressed
LOC_Os11g13870OsAffx.30964.1.S1_at11/1111+7646787..7647847uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g13880Os.18644.1.S1_at11/1111+7651028..7654757expressed protein
LOC_Os11g13880OsAffx.18835.1.S1_at9/1111+7651028..7654757expressed protein
LOC_Os11g13890OsAffx.18836.1.S1_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.12181.1.S1_s_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890OsAffx.18836.1.S1_x_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.37562.1.A1_x_at4/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13900OsAffx.31415.2.S1_s_at11/1111+7674147..7675351hypothetical protein
LOC_Os11g13910OsAffx.19287.2.S1_s_at11/1111+7675867..7677757hypothetical protein
LOC_Os11g13920OsAffx.30966.3.A1_x_at11/1111+7678841..7688349AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18644.1.S1_at--777--8371Chr11:7654346..7654370 (25 bp)
GGCGTTGAGCTTATAATTGCCTCCA
LOC_Os11g13880
Os.18644.1.S1_at--188--9751Chr11:7654359..7654383 (25 bp)
TAATTGCCTCCATCAGCTGTGTCAG
LOC_Os11g13880
Os.18644.1.S1_at--769--5171Chr11:7654418..7654442 (25 bp)
GCAAGTATGCTGTTGTCTTAGATGA
LOC_Os11g13880
Os.18644.1.S1_at--218--1571Chr11:7654452..7654476 (25 bp)
AGCTAGCCATGGGATGAAGCCTATT
LOC_Os11g13880
Os.18644.1.S1_at--239--71Chr11:7654532..7654556 (25 bp)
ATTGCACTGCAATGTTCTTTCTTAT
LOC_Os11g13880
Os.18644.1.S1_at--606--6731Chr11:7654545..7654569 (25 bp)
GTTCTTTCTTATTCTTGTGTACATC
LOC_Os11g13880
Os.18644.1.S1_at--867--671Chr11:7654599..7654623 (25 bp)
ATGAAATGCTATTGCAGTCTCTGCA
LOC_Os11g13880
Os.18644.1.S1_at--397--5031Chr11:7654612..7654636 (25 bp)
GCAGTCTCTGCATGTTAGAAATCCC
LOC_Os11g13880
Os.18644.1.S1_at--617--1391Chr11:7654680..7654704 (25 bp)
AGACTGGTGATCTCATTTGGCTGCT
LOC_Os11g13880
Os.18644.1.S1_at--171--8491Chr11:7654697..7654721 (25 bp)
TGGCTGCTTGTTATTACTCTGTTAA
LOC_Os11g13880
Os.18644.1.S1_at--351--3551Chr11:7654732..7654756 (25 bp)
CATCTCAGGCTGTGCTTTCTTGGAT
LOC_Os11g13880
Target Sequence 
GGCGTTGAGCTTATAATTGCCTCCATCAGCTGTGTCAGCCTATGAAAACTGGGTTATCATTGAAGGTTATAAGCAAGTAT
GCTGTTGTCTTAGATGAAGGTTTAGGAGCTAGCCATGGGATGAAGCCTATTGCAAGCAGTATGCTATCTTAGATGGAATT
TAGGAGTTAGTNCGTGGGATGCAGACTATTGCACTGCAATGTTCTTTCTTATTCTTGTGTACATCAGTAATTATGTCTAT
ATTTAATTAGGGTAATGAAATGCTATTGCAGTCTCTGCATGTTAGAAATCCCCCTGTGATGAACAGTGTCAGTTAGAATT
CAGGAACAAAATATGAGACTGGTGATCTCATTTGGCTGCTTGTTATTACTCTGTTAATGGTTGTGCTCATCTCAGGCTGT
GCTTTCTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis