Browse Element(s) Details


OsAffx.18835.1.S1_at

Description tigr:9639.m01282
TID=OsAffx.18835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g138809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13860Os.52720.1.S1_at11/1111+7639581..7645141Protein kinase domain containing protein, expressed
LOC_Os11g13870OsAffx.30964.1.S1_at11/1111+7646787..7647847uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g13880Os.18644.1.S1_at11/1111+7651028..7654757expressed protein
LOC_Os11g13880OsAffx.18835.1.S1_at9/1111+7651028..7654757expressed protein
LOC_Os11g13890OsAffx.18836.1.S1_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.12181.1.S1_s_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890OsAffx.18836.1.S1_x_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.37562.1.A1_x_at4/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13900OsAffx.31415.2.S1_s_at11/1111+7674147..7675351hypothetical protein
LOC_Os11g13910OsAffx.19287.2.S1_s_at11/1111+7675867..7677757hypothetical protein
LOC_Os11g13920OsAffx.30966.3.A1_x_at11/1111+7678841..7688349AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18835.1.S1_at--722--3651Chr11:7651215..7651604 (25 bp)
CTTCTTCGGCGAGATCAGCAAGCTT
LOC_Os11g13880
OsAffx.18835.1.S1_at--844--391Chr11:7651593..7651617 (25 bp)
ATCAGCAAGCTTGCCAGTGGGTGTA
LOC_Os11g13880
OsAffx.18835.1.S1_at--939--5952Chr11:7651808..7651832 (25 bp)
GAGAATTTCCAATTGTTGGCTCTAA
LOC_Os11g13880
OsAffx.18835.1.S1_at--752--3731NONE
CTAAATTCTTTGAACTGTGCAGGAT
NONE
OsAffx.18835.1.S1_at--257--2851NONE
AAGTCTTCCGATTTTTTTTGCCATG
NONE
OsAffx.18835.1.S1_at--1060--10371Chr11:7654105..7654129 (25 bp)
TTTTGCCATGGTTGTTAGACATACT
LOC_Os11g13880
OsAffx.18835.1.S1_at--540--10031Chr11:7654120..7654144 (25 bp)
TAGACATACTGTTCAGCTGGCGCTT
LOC_Os11g13880
OsAffx.18835.1.S1_at--197--311Chr11:7654125..7654149 (25 bp)
ATACTGTTCAGCTGGCGCTTATTGT
LOC_Os11g13880
OsAffx.18835.1.S1_at--102--4131Chr11:7654140..7654164 (25 bp)
CGCTTATTGTTTTCTGGACCTCGAT
LOC_Os11g13880
OsAffx.18835.1.S1_at--53--8091Chr11:7654155..7654179 (25 bp)
GGACCTCGATTTTTGTTAAGCATAC
LOC_Os11g13880
OsAffx.18835.1.S1_at--930--3091Chr11:7654193..7654213 (21 bp)
AATTTGGACTGTGCAACAAGGGACA
LOC_Os11g13880
Target Sequence 
CTTCTTCGGCGAGATCAGCAAGCTTGCCAGTGGGTGTAGTGGTATCATTAGGAGTTTAGGGTTTATCCGAGGAATTGAGA
ATTTCCAATTGTTGGCTCTAAATTCTTTGAACTGTGCAGGATTAGGTTATGGATTTCCCGGACTCACATTAGGCTTTGGA
GTTGGAGCTGGATGTGGTGTAGGATTTGGCTTTGGTTATGGATTGGGGAAAGGAATTGCTTATGATCAAAACAAAAGATA
CTCTAATGTTGGCACGATGTTCCAAGAAGCTCCAAGTCTTCCGATTTTTTTTGCCATGGTTGTTAGACATACTGTTCAGC
TGGCGCTTATTGTTTTCTGGACCTCGATTTTTGTTAAGCATACATGGATCAAGCTAAATTTGGACTGTGCAACAAGGGAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis