Browse Element(s) Details

Os.12181.1.S1_s_at

Description

gb:AK098872.1
DB_XREF= gi:32984081
TID=Os.12181.1
CNT=277
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-041-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001B10, full insert sequence.
FL= gb:AK098872.1 gb:AK104824.1 gb:AK061295.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g13890	11/11	Chlorophyll A-B binding protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g13850	Os.16966.1.S1_at	11/11	11	+	7634946..7638419	Rieske domain containing protein, expressed
LOC_Os11g13850	OsAffx.30963.1.S1_at	11/11	11	+	7634946..7638419	Rieske domain containing protein, expressed
LOC_Os11g13850	Os.16966.1.S1_s_at	11/11	11	+	7634946..7638419	Rieske domain containing protein, expressed
LOC_Os11g13860	Os.52720.1.S1_at	11/11	11	+	7639581..7645141	Protein kinase domain containing protein, expressed
LOC_Os11g13870	OsAffx.30964.1.S1_at	11/11	11	+	7646787..7647847	uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g13880	Os.18644.1.S1_at	11/11	11	+	7651028..7654757	expressed protein
LOC_Os11g13880	OsAffx.18835.1.S1_at	9/11	11	+	7651028..7654757	expressed protein
LOC_Os11g13890	OsAffx.18836.1.S1_at	11/11	11	+	7655143..7657687	Chlorophyll A-B binding protein, expressed
LOC_Os11g13890	Os.12181.1.S1_s_at	11/11	11	+	7655143..7657687	Chlorophyll A-B binding protein, expressed
LOC_Os11g13890	OsAffx.18836.1.S1_x_at	11/11	11	+	7655143..7657687	Chlorophyll A-B binding protein, expressed
LOC_Os11g13890	Os.37562.1.A1_x_at	4/11	11	+	7655143..7657687	Chlorophyll A-B binding protein, expressed
LOC_Os11g13900	OsAffx.31415.2.S1_s_at	11/11	11	+	7674147..7675351	hypothetical protein
LOC_Os11g13910	OsAffx.19287.2.S1_s_at	11/11	11	+	7675867..7677757	hypothetical protein
LOC_Os11g13920	OsAffx.30966.3.A1_x_at	11/11	11	+	7678841..7688349	AT hook motif-containing protein, putative

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Gene Ontology Classification

GO id	Type	Name
GO:0009769	biological_process	photosynthesis, light harvesting in photosystem II
GO:0015979	biological_process	photosynthesis
GO:0009517	cellular_component	PSII associated light-harvesting complex II
GO:0009533	cellular_component	chloroplast stromal thylakoid
GO:0009783	cellular_component	photosystem II antenna complex
GO:0030076	cellular_component	light-harvesting complex
GO:0042651	cellular_component	thylakoid membrane
GO:0005198	molecular_function	structural molecule activity
GO:0016168	molecular_function	chlorophyll binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12181.1.S1_s_at--806--829	1	Chr11:7656440..7656463 (24 bp)	GGCCCCGAGGCCGTCTGGTTCAAGA	LOC_Os11g13890
Os.12181.1.S1_s_at--576--423	1	Chr11:7656444..7656575 (25 bp)	CCGAGGCCGTCTGGTTCAAGACCGG	LOC_Os11g13890
Os.12181.1.S1_s_at--513--85	1	Chr11:7656447..7656578 (25 bp)	AGGCCGTCTGGTTCAAGACCGGCGC	LOC_Os11g13890
Os.12181.1.S1_s_at--123--853	1	Chr11:7656587..7656611 (25 bp)	TGGACGGCAACACCCTCAACTACTT	LOC_Os11g13890
Os.12181.1.S1_s_at--659--513	1	Chr11:7656593..7656617 (25 bp)	GCAACACCCTCAACTACTTCGGCAA	LOC_Os11g13890
Os.12181.1.S1_s_at--628--1059	1	Chr11:7656610..7656634 (25 bp)	TTCGGCAACAGCATCCCCATCAACC	LOC_Os11g13890
Os.12181.1.S1_s_at--863--403	1	Chr11:7656678..7656702 (25 bp)	CGAGTACTACCGGATCATCAACGGC	LOC_Os11g13890
Os.12181.1.S1_s_at--452--117	1	Chr11:7656680..7656704 (25 bp)	AGTACTACCGGATCATCAACGGCCT	LOC_Os11g13890
Os.12181.1.S1_s_at--1057--699	1	Chr11:7656681..7656705 (25 bp)	GTACTACCGGATCATCAACGGCCTG	LOC_Os11g13890
Os.12181.1.S1_s_at--63--641	1	Chr11:7657138..7657162 (25 bp)	GATCTGGAGGACAAGCTCCACCCAG	LOC_Os11g13890
Os.12181.1.S1_s_at--265--391	1	Chr11:7657141..7657165 (25 bp)	CTGGAGGACAAGCTCCACCCAGGTG	LOC_Os11g13890

Target Sequence

GGCCCCGAGGCCGTCTGGTTCAAGACCGGCGCCCNTCCTTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGCATC
CCCATCAACCTCATCGTCGCCGTCGCCGCCGAGGTCGTCCTCGTCGGCGGCGCCGAGTACTACCGGATCATCAACGGCCT
GGATCTGGAGGACAAGCTCCACCCAGGTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis