Browse Element(s) Details


OsAffx.30963.1.S1_at

Description tigr:9639.m01279
TID=OsAffx.30963.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=iron-sulfur cluster-binding protein, rieske family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1385011/11Rieske domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13820OsAffx.18834.1.S1_x_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13820OsAffx.18834.1.S1_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13830OsAffx.30960.1.S1_at11/1111+7615460..7615705hypothetical protein
LOC_Os11g13840NANA11+7623129..7623734AP2 domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13860Os.52720.1.S1_at11/1111+7639581..7645141Protein kinase domain containing protein, expressed
LOC_Os11g13870OsAffx.30964.1.S1_at11/1111+7646787..7647847uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g13880Os.18644.1.S1_at11/1111+7651028..7654757expressed protein
LOC_Os11g13880OsAffx.18835.1.S1_at9/1111+7651028..7654757expressed protein
LOC_Os11g13890OsAffx.18836.1.S1_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.12181.1.S1_s_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890OsAffx.18836.1.S1_x_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.37562.1.A1_x_at4/1111+7655143..7657687Chlorophyll A-B binding protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30963.1.S1_at--95--8131Chr11:7635548..7635572 (25 bp)
GGACTTCATATATGCAATCTCAAGA
LOC_Os11g13850
OsAffx.30963.1.S1_at--872--651Chr11:7635537..7635561 (25 bp)
ATGCAATCTCAAGAGCTTTCAGCTC
LOC_Os11g13850
OsAffx.30963.1.S1_at--370--9911Chr11:7635110..7635134 (25 bp)
TACTGTACGTAGAAAAACTTTGATG
LOC_Os11g13850
OsAffx.30963.1.S1_at--756--6271Chr11:7635089..7635113 (25 bp)
GATGTAGTTCTCGTATGTAGTCTGA
LOC_Os11g13850
OsAffx.30963.1.S1_at--434--8751Chr11:7635074..7635098 (25 bp)
TGTAGTCTGAGCTTGTAACTGTACT
LOC_Os11g13850
OsAffx.30963.1.S1_at--613--4931Chr11:7635064..7635088 (25 bp)
GCTTGTAACTGTACTCATGCTGCAA
LOC_Os11g13850
OsAffx.30963.1.S1_at--932--9611Chr11:7635050..7635074 (25 bp)
TCATGCTGCAAATAGGCTGGTTTCT
LOC_Os11g13850
OsAffx.30963.1.S1_at--1097--211Chr11:7635039..7635063 (25 bp)
ATAGGCTGGTTTCTAAGAACTTGGA
LOC_Os11g13850
OsAffx.30963.1.S1_at--360--2511Chr11:7635022..7635046 (25 bp)
AACTTGGAGAGAAATCCTTGTGAAC
LOC_Os11g13850
OsAffx.30963.1.S1_at--692--6731Chr11:7634988..7635012 (25 bp)
GTTCATTAAGGTACTTTGTTTTGAT
LOC_Os11g13850
OsAffx.30963.1.S1_at--115--2051Chr11:7634976..7635000 (25 bp)
ACTTTGTTTTGATCAGACACATTGT
LOC_Os11g13850
Target Sequence 
GGACTTCATATATGCAATCTCAAGAGCTTTCAGCTCATAAGGATGCTTCTTCTTTGGTGTAGAATGTTGTCCATGTACAT
CACTCATNNNNNNNATATTTGGAGTAAAAATGGATGGGAAGCAAATGAGGAAAGCAGATGGTAAGTTGGTAACATAGAAC
ATGTGATGGGAATCAACAAAGTGGATGTAATACTGTACGTAGAAAAACTTTGATGTAGTTCTCGTATGTAGTCTGAGCTT
GTAACTGTACTCATGCTGCAAATAGGCTGGTTTCTAAGAACTTGGAGAGAAATCCTTGTGAACAATGAGAAAGTTCATTA
AGGTACTTTGTTTTGATCAGACACATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis