Browse Element(s) Details


OsAffx.18834.1.S1_x_at

Description tigr:9639.m01274
TID=OsAffx.18834.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine phosphatase type 2c, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1382010/11Protein phosphatase 2C containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13810Os.10371.1.S1_at11/1111+7590762..7602318expressed protein
LOC_Os11g13820OsAffx.18834.1.S1_x_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13820OsAffx.18834.1.S1_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13830OsAffx.30960.1.S1_at11/1111+7615460..7615705hypothetical protein
LOC_Os11g13840NANA11+7623129..7623734AP2 domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18834.1.S1_x_at--959--5871Chr11:7611909..7611933 (25 bp)
GAGCGGCGTACCTGGCCACCGACAG
LOC_Os11g13820
OsAffx.18834.1.S1_x_at--777--4611NONE
GCGAGTTCCTCAGCCAGGGAACAAG
NONE
OsAffx.18834.1.S1_x_at--37--7391Chr11:7613254..7613278 (25 bp)
GTGATCGACGGCGACCTCTACGTCG
LOC_Os11g13820
OsAffx.18834.1.S1_x_at--184--5791Chr11:7613359..7613383 (25 bp)
GACGACGAGAGGTCCCGCATCGAGT
LOC_Os11g13820
OsAffx.18834.1.S1_x_at--347--1331Chr11:7613366..7613389 (24 bp)
AGAGGTCCCGCATCGAGTCCTCGGG
LOC_Os11g13820
OsAffx.18834.1.S1_x_at--305--5051Chr11:7613513..7613537 (25 bp)
GCAGCAATGGCGTGTGGCGCGTGCA
LOC_Os11g13820
OsAffx.18834.1.S1_x_at--742--7331Chr11:7613533..7613557 (25 bp)
GTGCAGGACTGCCTCGCGGTGACGA
LOC_Os11g13820
OsAffx.18834.1.S1_x_at--343--9291Chr11:7613659..7613683 (25 bp)
TCCGACGGCCTCTGGAACAAGGTGT
LOC_Os11g13820
OsAffx.18834.1.S1_x_at--614--9331Chr11:7613708..7613732 (25 bp)
TCGCCGCCGGCCATTATTCCGTGGA
LOC_Os11g13820
OsAffx.18834.1.S1_x_at--216--4271Chr11:7613714..7613738 (25 bp)
CCGGCCATTATTCCGTGGACTCGTG
LOC_Os11g13820
OsAffx.18834.1.S1_x_at--370--151Chr11:7613720..7613744 (25 bp)
ATTATTCCGTGGACTCGTGCCGGCG
LOC_Os11g13820
Target Sequence 
GAGCGGCGTACCTGGCCACCGACAGCGAGTTCCTCAGCCAGGGAACAAGAGGCGGCGCATGCGCTGCGACGGCGCTGGTG
ATCGACGGCGACCTCTACGTCGCCAACCTCGGCGACTGCCGCGCCGTCATCAGCCGCCACGGCGCCGCCGCCGCCCTCAC
CTCCGACCACACGCCGGCGAGGGACGACGAGAGGTCCCGCATCGAGTCCTCGGGCGGGTACGTGAGCTGCGGCAGCAATG
GCGTGTGGCGCGTGCAGGACTGCCTCGCGGTGACGAGGTCGTTCGGCGACGGCGGCCTGAAGCGGTGGGTGGTGGCGGAG
CCGGAGGTGAGCAGGACGCCGCTCGCCGGCGCCGGCTGCGAGTTCCTCGTCATCGCCTCCGACGGCCTCTGGAACAAGGT
GTCCAACCAGGAGGCGGTGGACGCCGTCGCCGCCGGCCATTATTCCGTGGACTCGTGCCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18834.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis