Browse Element(s) Details


Os.37562.1.A1_x_at

Description gb:D85512.1
DB_XREF= gi:2073379
TID=Os.37562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) CP26 mRNA, partial sequence
DEF=Oryza sativa (japonica cultivar-group) CP26 mRNA, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g138904/11Chlorophyll A-B binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13860Os.52720.1.S1_at11/1111+7639581..7645141Protein kinase domain containing protein, expressed
LOC_Os11g13870OsAffx.30964.1.S1_at11/1111+7646787..7647847uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g13880Os.18644.1.S1_at11/1111+7651028..7654757expressed protein
LOC_Os11g13880OsAffx.18835.1.S1_at9/1111+7651028..7654757expressed protein
LOC_Os11g13890OsAffx.18836.1.S1_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.12181.1.S1_s_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890OsAffx.18836.1.S1_x_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.37562.1.A1_x_at4/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13900OsAffx.31415.2.S1_s_at11/1111+7674147..7675351hypothetical protein
LOC_Os11g13910OsAffx.19287.2.S1_s_at11/1111+7675867..7677757hypothetical protein
LOC_Os11g13920OsAffx.30966.3.A1_x_at11/1111+7678841..7688349AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0015979biological_processphotosynthesis
GO:0009517cellular_componentPSII associated light-harvesting complex II
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0009783cellular_componentphotosystem II antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0042651cellular_componentthylakoid membrane
GO:0005198molecular_functionstructural molecule activity
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37562.1.A1_x_at--61--7191NONE
GTCGTCCTCCTTGCTTCTCGAATAC
NONE
Os.37562.1.A1_x_at--438--4911NONE
GCTTCTCGAATACTACGGATCATCA
NONE
Os.37562.1.A1_x_at--657--10591NONE
TTCTCGAATACTACGGATCATCAAG
NONE
Os.37562.1.A1_x_at--1000--5191NONE
GAATACTACGGATCATCAAGGCCTG
NONE
Os.37562.1.A1_x_at--583--1811NONE
ACCCAGACGGCGCTGCTGAAGTTGA
NONE
Os.37562.1.A1_x_at--1002--4171NONE
CCCAGACGGCGCTGCTGAAGTTGAA
NONE
Os.37562.1.A1_x_at--610--4571NONE
GCGCTGCTGAAGTTGAAGGAGATCA
NONE
Os.37562.1.A1_x_at--158--731Chr11:7657252..7657276 (25 bp)
ATGTTCTCCATGCTGGGGTTCTTCA
LOC_Os11g13890
Os.37562.1.A1_x_at--983--7671Chr11:7657267..7657291 (25 bp)
GGGTTCTTCATCCAGGCCTACGTCA
LOC_Os11g13890
Os.37562.1.A1_x_at--666--9231Chr11:7657277..7657301 (25 bp)
TCCAGGCCTACGTCACCGGCGAGGG
LOC_Os11g13890
Os.37562.1.A1_x_at--393--9371Chr11:7657307..7657331 (25 bp)
TCGAGAACCTCTCCAAGCACCTCAG
LOC_Os11g13890
Target Sequence 
GTCGTCCTCCTTGCTTCTCGAATACTACGGATCATCAAGGCCTGNANTGGAGAAAANCTCCACCCANTTGGCCNATTCGA
CCCGCTGGGGCTGNCGAACGACCCGGACCCAGACGGCGCTGCTGAAGTTGAAGGAGATCAAGAACGGGCGGCTGGCCATG
TTCTCCATGCTGGGGTTCTTCATCCAGGCCTACGTCACCGGCGAGGGCCCCGTCGAGAACCTCTCCAAGCACCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37562.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis