Browse Element(s) Details


OsAffx.30964.1.S1_at

Description tigr:9639.m01281
TID=OsAffx.30964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=uncharacterized plant-specific domain TIGR01627, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1387011/11uncharacterized plant-specific domain TIGR01627 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13840NANA11+7623129..7623734AP2 domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13860Os.52720.1.S1_at11/1111+7639581..7645141Protein kinase domain containing protein, expressed
LOC_Os11g13870OsAffx.30964.1.S1_at11/1111+7646787..7647847uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g13880Os.18644.1.S1_at11/1111+7651028..7654757expressed protein
LOC_Os11g13880OsAffx.18835.1.S1_at9/1111+7651028..7654757expressed protein
LOC_Os11g13890OsAffx.18836.1.S1_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.12181.1.S1_s_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890OsAffx.18836.1.S1_x_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.37562.1.A1_x_at4/1111+7655143..7657687Chlorophyll A-B binding protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30964.1.S1_at--648--2631Chr11:7647338..7647362 (25 bp)
AACCTGCTCGTGTTCGGGCTCGGCC
LOC_Os11g13870
OsAffx.30964.1.S1_at--191--9891Chr11:7647047..7647071 (25 bp)
TTCTACGAGGCGGAGTGGGACGTGA
LOC_Os11g13870
OsAffx.30964.1.S1_at--905--7591Chr11:7647031..7647055 (25 bp)
GGGACGTGATCGTGGTCGACGCGCA
LOC_Os11g13870
OsAffx.30964.1.S1_at--223--8871Chr11:7646977..7647001 (25 bp)
TGATGGGCGCGATATACACCGCGGC
LOC_Os11g13870
OsAffx.30964.1.S1_at--1064--9011Chr11:7646899..7646923 (25 bp)
TGCACGACGTGGACAAGCCGGTGCA
LOC_Os11g13870
OsAffx.30964.1.S1_at--809--2211Chr11:7646887..7646911 (25 bp)
ACAAGCCGGTGCAGGACAGGTTCTC
LOC_Os11g13870
OsAffx.30964.1.S1_at--997--9011Chr11:7646878..7646902 (25 bp)
TGCAGGACAGGTTCTCGACGGCGTT
LOC_Os11g13870
OsAffx.30964.1.S1_at--1086--5651Chr11:7646873..7646897 (25 bp)
GACAGGTTCTCGACGGCGTTCCTGT
LOC_Os11g13870
OsAffx.30964.1.S1_at--941--1911Chr11:7646861..7646885 (25 bp)
ACGGCGTTCCTGTGCGGCGGCTACC
LOC_Os11g13870
OsAffx.30964.1.S1_at--884--7651Chr11:7646827..7646851 (25 bp)
GGGTTGGCAACCTCAGGCGATTCGC
LOC_Os11g13870
OsAffx.30964.1.S1_at--1067--10851Chr11:7646824..7646848 (25 bp)
TTGGCAACCTCAGGCGATTCGCCAT
LOC_Os11g13870
Target Sequence 
AACCTGCTCGTGTTCGGGCTCGGCCACGGCGCCGCGCTCTGGGCGGCGCTCAACCACGGCGGCCGCACGGTGTTCCTCGA
GGAGGACGACGCGCTGGTGTCCGGCGCCAGCCCGGCCAGCCTCGCCATCGAGGCCTACCGCGTCGCCTACCTCGCCAGCG
CCGCCGACGCCGACGAGCTCCTCGCCCTCCGCGACTCCGAGCACTGCACCGGCGCCGCCGCCACCCAGCTCTCGCCGGGC
CACTTCGACCGCTCGCCGTGCAAGCTCGCCGTGCGCGGCCTCCCCGCGGCGTTCTACGAGGCGGAGTGGGACGTGATCGT
GGTCGACGCGCACGCGCCGCCGCCGCCGACGACGACGGCGATGATGGGCGCGATATACACCGCGGCGGTGGCGGCGCGGG
CGCGGCGGCCGGCGGCGGAGACGGAGACGGACGTGGTGGTGCACGACGTGGACAAGCCGGTGCAGGACAGGTTCTCGACG
GCGTTCCTGTGCGGCGGCTACCTCAAGGAGGGGGTTGGCAACCTCAGGCGATTCGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis