Browse Element(s) Details


Os.52720.1.S1_at

Description gb:AK068916.1
DB_XREF= gi:32978940
TID=Os.52720.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52720 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002H13, full insert sequence.
FL= gb:AK068916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1386011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13830OsAffx.30960.1.S1_at11/1111+7615460..7615705hypothetical protein
LOC_Os11g13840NANA11+7623129..7623734AP2 domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850OsAffx.30963.1.S1_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13850Os.16966.1.S1_s_at11/1111+7634946..7638419Rieske domain containing protein, expressed
LOC_Os11g13860Os.52720.1.S1_at11/1111+7639581..7645141Protein kinase domain containing protein, expressed
LOC_Os11g13870OsAffx.30964.1.S1_at11/1111+7646787..7647847uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g13880Os.18644.1.S1_at11/1111+7651028..7654757expressed protein
LOC_Os11g13880OsAffx.18835.1.S1_at9/1111+7651028..7654757expressed protein
LOC_Os11g13890OsAffx.18836.1.S1_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.12181.1.S1_s_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890OsAffx.18836.1.S1_x_at11/1111+7655143..7657687Chlorophyll A-B binding protein, expressed
LOC_Os11g13890Os.37562.1.A1_x_at4/1111+7655143..7657687Chlorophyll A-B binding protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52720.1.S1_at--861--851Chr11:7644449..7644473 (25 bp)
ATGGCAGGGCTGCATTCTTGCACAG
LOC_Os11g13860
Os.52720.1.S1_at--1088--9571Chr11:7644464..7644488 (25 bp)
TCTTGCACAGAGCACAGAGCTTCTT
LOC_Os11g13860
Os.52720.1.S1_at--5--6371Chr11:7644709..7644733 (25 bp)
GATCCAGATCATGCCGGAGCAACTA
LOC_Os11g13860
Os.52720.1.S1_at--191--2491Chr11:7644818..7644842 (25 bp)
AACAGAGTGCCAGGGATATCCGAAA
LOC_Os11g13860
Os.52720.1.S1_at--413--251Chr11:7644833..7644857 (25 bp)
ATATCCGAAAGCGTAGACTGGCCTT
LOC_Os11g13860
Os.52720.1.S1_at--1082--5731Chr11:7644848..7644872 (25 bp)
GACTGGCCTTTATTCTTGCCTGAAT
LOC_Os11g13860
Os.52720.1.S1_at--370--8771Chr11:7644876..7644900 (25 bp)
TGTTTCACCAAGCTTCTGTGGTCTT
LOC_Os11g13860
Os.52720.1.S1_at--980--10291Chr11:7644899..7644923 (25 bp)
TTTCCCCTTGTTATGGCTGTTCTAA
LOC_Os11g13860
Os.52720.1.S1_at--118--9471Chr11:7644939..7644963 (25 bp)
TCTGGTGTTGCTAGACGGGCTTGTA
LOC_Os11g13860
Os.52720.1.S1_at--65--2532Chr11:7644966..7644990 (25 bp)
AACTTTTCATCCTCTTATTTCTCTT
LOC_Os11g13860
Os.52720.1.S1_at--620--8691Chr11:7645022..7645046 (25 bp)
TGTGCATTCTTTGTCCAGTTTTTTG
LOC_Os11g13860
Target Sequence 
ATGGCAGGGCTGCATTCTTGCACAGAGCACAGAGCTTCTTCAAAAGGATCAAGATCAAACCTGAAATGTCGATACAATAC
GAGAGTTTGGGCATGGACATTATTTCAAATGACAGGTTGTCCTTTGAACCTGAAATTCTTGACTGATGGCAGTGAGAGAT
CCAGATCATGCCGGAGCAACTAAGAAGAAATTTCGACAACATTGAGTCATGGATAGGTACATCTTACAGTTACAAAGTAT
GAGCAGCACTGCGGAAGAGGAGGCCAAACAGAGTGCCAGGGATATCCGAAAGCGTAGACTGGCCTTTATTCTTGCCTGAA
TTCTTGTTTCACCAAGCTTCTGTGGTCTTTCCCCTTGTTATGGCTGTTCTAACCCATGCCATCTGCATCTGGTGTTGCTA
GACGGGCTTGTATAAACTTTTCATCCTCTTATTTCTCTTGTTTTTCTTCTTGCAAGGGTCTTATATAAACTGTGCATTCT
TTGTCCAGTTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis