Browse Element(s) Details


OsAffx.18838.1.S1_at

Description tigr:9639.m01288
TID=OsAffx.18838.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1393010/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13900OsAffx.31415.2.S1_s_at11/1111+7674147..7675351hypothetical protein
LOC_Os11g13910OsAffx.19287.2.S1_s_at11/1111+7675867..7677757hypothetical protein
LOC_Os11g13920OsAffx.30966.3.A1_x_at11/1111+7678841..7688349AT hook motif-containing protein, putative
LOC_Os11g13930OsAffx.18838.1.S1_at10/1111+7689853..7691892ZF-HD protein dimerisation region containing protein, expressed
LOC_Os11g13940OsAffx.18839.1.S1_at11/1111+7707484..7712471NB-ARC domain containing protein, expressed
LOC_Os11g13950NANA11+7716612..7717241hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18838.1.S1_at--1022--1791Chr11:7691433..7691457 (25 bp)
ACCGCCATGAGCATGTGGGTAACAA
LOC_Os11g13930
OsAffx.18838.1.S1_at--882--7031Chr11:7691415..7691439 (25 bp)
GTAACAATGGGCAAGCGATGGCGAT
LOC_Os11g13930
OsAffx.18838.1.S1_at--818--1711Chr11:7690908..7690932 (25 bp)
ACCAGATCATCATGCCGCTCAACAT
LOC_Os11g13930
OsAffx.18838.1.S1_at--331--591Chr11:7690897..7690921 (25 bp)
ATGCCGCTCAACATGATCCACACGT
LOC_Os11g13930
OsAffx.18838.1.S1_at--892--2091Chr11:7690887..7690911 (25 bp)
ACATGATCCACACGTCGGAGTCCGA
LOC_Os11g13930
OsAffx.18838.1.S1_at--847--811Chr11:7690699..7690723 (25 bp)
ATGGTGCACCACTTCTGCCAGGAGA
LOC_Os11g13930
OsAffx.18838.1.S1_at--1028--7251NONE
GTCCTCAAGCATGCTGTCGGTGATG
NONE
OsAffx.18838.1.S1_at--783--7191Chr11:7689918..7689942 (25 bp)
GTCGGTGATGTTACTGTGGCCGTCA
LOC_Os11g13930
OsAffx.18838.1.S1_at--349--9931Chr11:7689907..7689931 (25 bp)
TACTGTGGCCGTCATGTCTGATCAT
LOC_Os11g13930
OsAffx.18838.1.S1_at--468--9631Chr11:7689896..7689920 (25 bp)
TCATGTCTGATCATCTCACCAGCAA
LOC_Os11g13930
OsAffx.18838.1.S1_at--583--6431Chr11:7689888..7689912 (25 bp)
GATCATCTCACCAGCAAAATTAAAG
LOC_Os11g13930
Target Sequence 
ACCGCCATGAGCATGTGGGTAACAATGGGCAAGCGATGGCGATGGCGTCACCGCCGCCGACGAATGTTGCGGTGGCGGCG
GAGCAGGAGGGCTCGCCGGTGGCGGGGAAGAAGCGGGGCGGCATGGCGGTGAACGGCGGCGGCCTCCTCGTCGCCGGCGG
CGACCCCTACGGCGCCGCCTACGCCGCGGCGCGCGCGCTCCCGCCACCGCCGCCGCCGCCGCCGCACGGCCACCACCACC
ACCACCAGATCATCATGCCGCTCAACATGATCCACACGTCGGAGTCCGACGAGATGGACGTCAGCGGCGGCGGCGGCGGC
GTGGGACGCGGCGGTGGGTCGTCGTCGTCGTCGAAGAAGCGGTTCCGCACCAAGTTCACGGCGGAGCAGAAGGCGCGGAT
GCTGGAGTTCGCGGAACGCGTGGGGTGGCGCCTCCAGAAGCTCGACGACGCCATGGTGCACCACTTCTGCCAGGAGATCG
GCGTCAAGCGCCGCGTCCTCAAGCATGCTGTCGGTGATGTTACTGTGGCCGTCATGTCTGATCATCTCACCAGCAAAATT
AAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis