Browse Element(s) Details


OsAffx.17127.1.S1_at

Description tigr:9636.m02387
TID=OsAffx.17127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2438011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24330Os.52481.1.S1_at11/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24330OsAffx.9230.1.S1_x_at6/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24340NANA8+14563219..14564014hypothetical protein
LOC_Os08g24350OsAffx.17125.1.S1_at11/118+14565592..14566607hypothetical protein
LOC_Os08g24350OsAffx.2524.2.S1_at2/118+14565592..14566607hypothetical protein
LOC_Os08g24360OsAffx.29328.1.S1_at9/118+14569922..14572334hypothetical protein
LOC_Os08g24370OsAffx.17126.1.S1_at11/118+14575515..14577065F-box domain containing protein
LOC_Os08g24380OsAffx.17127.1.S1_at11/118+14581809..14588483NB-ARC domain containing protein, expressed
LOC_Os08g24390Os.33708.1.S1_s_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.56276.1.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.33708.2.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24400Os.50132.1.S1_at11/118+14605752..14609430CRSP complex subunit 2, putative, expressed
LOC_Os08g24410Os.45957.4.S1_x_at6/118+14613329..14618665retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0005739cellular_componentmitochondrion
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17127.1.S1_at--2--1551Chr08:14582348..14582372 (25 bp)
AGCATTGGCCATGAACTCTTTGGTA
LOC_Os08g24380
OsAffx.17127.1.S1_at--63--4931Chr08:14582283..14582307 (25 bp)
GCTTGAGCTGCTTGAGATCGTTGAC
LOC_Os08g24380
OsAffx.17127.1.S1_at--644--1951Chr08:14582251..14582275 (25 bp)
ACTGGCAGAGTTGGTCGGTTAGCAC
LOC_Os08g24380
OsAffx.17127.1.S1_at--774--8151Chr08:14582202..14582226 (25 bp)
GGAAACCATCTCACGATCAGTCTTT
LOC_Os08g24380
OsAffx.17127.1.S1_at--1144--6431Chr08:14582188..14582212 (25 bp)
GATCAGTCTTTCTTATGCCATGCAT
LOC_Os08g24380
OsAffx.17127.1.S1_at--448--2411Chr08:14582136..14582160 (25 bp)
AAAACTGAGAGCTCTCCCCGAAGAT
LOC_Os08g24380
OsAffx.17127.1.S1_at--70--951Chr08:14582056..14582080 (25 bp)
AGGAAATCGTCTACCATCCCGGAAT
LOC_Os08g24380
OsAffx.17127.1.S1_at--550--4251Chr08:14582038..14582062 (25 bp)
CCGGAATCGTCTGGCTCAAGGTCAA
LOC_Os08g24380
OsAffx.17127.1.S1_at--123--2831Chr08:14581976..14582000 (25 bp)
AAGTTGCAACTCTTACTTGCGCAGG
LOC_Os08g24380
OsAffx.17127.1.S1_at--1118--4871Chr08:14581923..14581947 (25 bp)
GCTTAGCTCGCTGAAAACCTTGTAC
LOC_Os08g24380
OsAffx.17127.1.S1_at--564--2611Chr08:14581908..14581932 (25 bp)
AACCTTGTACATGGTCGACTGTCCA
LOC_Os08g24380
Target Sequence 
AGCATTGGCCATGAACTCTTTGGTAAAGGGGTAGTGTCTCCAACACATACCATTATATTTCCAAAGCTTGAGCTGCTTGA
GATCGTTGACATGTACAACTGGCAGAGTTGGTCGGTTAGCACAGAAAGCTTGTCTGATGGCACATCGGAAACCATCTCAC
GATCAGTCTTTCTTATGCCATGCATCAGGTACCTGCAGCTGATAAATTGCCCAAAACTGAGAGCTCTCCCCGAAGATCTG
CACAGAATTGTTAACCTACGAAGGGTTCTTATAGAAGGTGTGCACAGCCTGCAGGAAATCGTCTACCATCCCGGAATCGT
CTGGCTCAAGGTCAAGAACAATAAAAGCTTGAGGAGGATATCCAATCTTTCTAAGTTGCAACTCTTACTTGCGCAGGACT
GCTCGGAATTGCAGCAGGCTGAGGAGCTTAGCTCGCTGAAAACCTTGTACATGGTCGACTGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis