Browse Element(s) Details


OsAffx.17126.1.S1_at

Description tigr:9636.m02386
TID=OsAffx.17126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2437011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24320OsAffx.4814.1.S1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24320Os.24150.1.A1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24330Os.52481.1.S1_at11/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24330OsAffx.9230.1.S1_x_at6/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24340NANA8+14563219..14564014hypothetical protein
LOC_Os08g24350OsAffx.17125.1.S1_at11/118+14565592..14566607hypothetical protein
LOC_Os08g24350OsAffx.2524.2.S1_at2/118+14565592..14566607hypothetical protein
LOC_Os08g24360OsAffx.29328.1.S1_at9/118+14569922..14572334hypothetical protein
LOC_Os08g24370OsAffx.17126.1.S1_at11/118+14575515..14577065F-box domain containing protein
LOC_Os08g24380OsAffx.17127.1.S1_at11/118+14581809..14588483NB-ARC domain containing protein, expressed
LOC_Os08g24390Os.33708.1.S1_s_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.56276.1.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.33708.2.S1_at11/118+14592095..14599190expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17126.1.S1_at--976--9151Chr08:14576086..14576110 (25 bp)
TGCGCGTGTACTGCGTCGACGACAT
LOC_Os08g24370
OsAffx.17126.1.S1_at--1001--8511Chr08:14576002..14576026 (25 bp)
TGGAAGCACAGTACCTGCACAGCCG
LOC_Os08g24370
OsAffx.17126.1.S1_at--821--10151Chr08:14575976..14576000 (25 bp)
TATCAGACGCCCATATCGTTGTCAG
LOC_Os08g24370
OsAffx.17126.1.S1_at--819--3031Chr08:14575933..14575957 (25 bp)
AATCCTGCCCAGCTGTTTCTGAACT
LOC_Os08g24370
OsAffx.17126.1.S1_at--907--5431Chr08:14575913..14575937 (25 bp)
GAACTCCGGCTCAGGCTAACAACGA
LOC_Os08g24370
OsAffx.17126.1.S1_at--512--1171Chr08:14575804..14575828 (25 bp)
AGTCAAGCTCAAGTTCTTCTTCCAA
LOC_Os08g24370
OsAffx.17126.1.S1_at--719--431Chr08:14575768..14575792 (25 bp)
ATCTTGAGCTTAAGCGTCAGCGCGT
LOC_Os08g24370
OsAffx.17126.1.S1_at--551--9771Chr08:14575744..14575768 (25 bp)
TAAGCGAGCCGGCAATCGAATGTTT
LOC_Os08g24370
OsAffx.17126.1.S1_at--1152--1031Chr08:14575702..14575726 (25 bp)
AGGTGACCATGGAATTCACGGCCAA
LOC_Os08g24370
OsAffx.17126.1.S1_at--1024--9371Chr08:14575618..14575642 (25 bp)
TCGAGGAGTTGCACGTTGATGACAC
LOC_Os08g24370
OsAffx.17126.1.S1_at--608--10771Chr08:14575603..14575627 (25 bp)
TTGATGACACAGCACAGTTCTTCCT
LOC_Os08g24370
Target Sequence 
TGCGCGTGTACTGCGTCGACGACATTCTCGACGACGGCGGCGGCGGCGCCCTCCCCGTCTTCCCCAACCTCGCGTTCCTC
CACCTGGAAGCACAGTACCTGCACAGCCGCTATCAGACGCCCATATCGTTGTCAGCAATGGCGAAGCTGCTCCAATCCTG
CCCAGCTGTTTCTGAACTCCGGCTCAGGCTAACAACGAAGGATGACAGCCACAGCCACCCCGTGTCCGAAGAACAGCGCT
TCAACCGAAGGATATCCGGGAACTCCATTGGGAGGAGGATCGAGTCAAGCTCAAGTTCTTCTTCCAAGGACGAAGGTGAT
CTTGAGCTTAAGCGTCAGCGCGTAAGCGAGCCGGCAATCGAATGTTTGGAGAAAACCGTCAGGAAGGTGACCATGGAATT
CACGGCCAAGGAGATGGACAGTTTTCCGGTCCATCTCACCAAGTTCCTGGTGGAGAACGCCATGGTTCTCGAGGAGTTGC
ACGTTGATGACACAGCACAGTTCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis