Browse Element(s) Details


Os.52481.1.S1_at

Description gb:AK067415.1
DB_XREF= gi:32977433
TID=Os.52481.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013101K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013101K10, full insert sequence.
FL= gb:AK067415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2433011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24300NANA8+14530555..14531231expressed protein
LOC_Os08g24310Os.54153.1.S1_at11/118+14540212..14546578Leucine Rich Repeat family protein, expressed
LOC_Os08g24320OsAffx.4814.1.S1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24320Os.24150.1.A1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24330Os.52481.1.S1_at11/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24330OsAffx.9230.1.S1_x_at6/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24340NANA8+14563219..14564014hypothetical protein
LOC_Os08g24350OsAffx.17125.1.S1_at11/118+14565592..14566607hypothetical protein
LOC_Os08g24350OsAffx.2524.2.S1_at2/118+14565592..14566607hypothetical protein
LOC_Os08g24360OsAffx.29328.1.S1_at9/118+14569922..14572334hypothetical protein
LOC_Os08g24370OsAffx.17126.1.S1_at11/118+14575515..14577065F-box domain containing protein
LOC_Os08g24380OsAffx.17127.1.S1_at11/118+14581809..14588483NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52481.1.S1_at--100--7331Chr08:14556589..14556613 (25 bp)
GTGCTAGGGCTTGCATTGTGCTGAT
LOC_Os08g24330
Os.52481.1.S1_at--622--10831Chr08:14556574..14556598 (25 bp)
TTGTGCTGATCAAGTGTGACCCCTA
LOC_Os08g24330
Os.52481.1.S1_at--614--8591Chr08:14556560..14556584 (25 bp)
TGTGACCCCTACTTTTACGAGTTAT
LOC_Os08g24330
Os.52481.1.S1_at--209--1871Chr08:14556544..14556568 (25 bp)
ACGAGTTATTCCTTGGTGATGCCAT
LOC_Os08g24330
Os.52481.1.S1_at--452--7751Chr08:14556530..14556554 (25 bp)
GGTGATGCCATTACTCAGGAGATGC
LOC_Os08g24330
Os.52481.1.S1_at--8--1211Chr08:14556502..14556526 (25 bp)
AGTATTACATTCTCTTCCACTATGC
LOC_Os08g24330
Os.52481.1.S1_at--1008--791Chr08:14556463..14556487 (25 bp)
ATGGTGGAGGTTTTCCCTCTACCAT
LOC_Os08g24330
Os.52481.1.S1_at--994--3751Chr08:14556447..14556471 (25 bp)
CTCTACCATCATGCTCAGGAGGTTG
LOC_Os08g24330
Os.52481.1.S1_at--540--3891Chr08:14556282..14556306 (25 bp)
CTGTGTGTTGTATGCCGAAGCTGAT
LOC_Os08g24330
Os.52481.1.S1_at--232--6211Chr08:14556137..14556161 (25 bp)
GAGGCTAAAGCTCAAGTGTGCTCAA
LOC_Os08g24330
Os.52481.1.S1_at--41--4831Chr08:14556118..14556142 (25 bp)
GCTCAAGCAACCTTTTTATTCCATC
LOC_Os08g24330
Target Sequence 
GTGCTAGGGCTTGCATTGTGCTGATCAAGTGTGACCCCTACTTTTACGAGTTATTCCTTGGTGATGCCATTACTCAGGAG
ATGCGTGAGTATTACATTCTCTTCCACTATGCCATGAAGTTTCCTAATGGTGGAGGTTTTCCCTCTACCATCATGCTCAG
GAGGTTGGTTTCCACCTGGTGGTGGAGGGTTTGATGGGGACGATGGGGGTGACCCTGGGGATGATGGCACTGGGGGAGCT
GATGGTGCAACATTGTGCTGATGGGGGATGGAGCTGGTAGTGTTGCTGCTGCTGGGAGCGTTGTGTGCTGTGTGTTGTAT
GCCGAAGCTGATGGGAGTGTGCTGCTATGTGCTGTGTGTGATGCTGTGAGGTGTGTGCTGTTGTTGTGAGCTGCAGTTTG
CAGTTGAGTGCTAGCTGCTATTAAGTGCAAAAGCTGATGTTTGCTGCTGCAGGAGGCTAAAGCTCAAGTGTGCTCAAGCA
ACCTTTTTATTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis