Browse Element(s) Details


Os.54153.1.S1_at

Description gb:AK102219.1
DB_XREF= gi:32987428
TID=Os.54153.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087L13, full insert sequence.
FL= gb:AK102219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2431011/11Leucine Rich Repeat family protein, expressed
LOC_Os01g663791/11peptide chain release factor, putative, expressed
LOC_Os04g104201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24270NANA8+14513311..14519358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24280Os.46314.3.S1_at3/118+14521315..14524143transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24290OsAffx.23366.1.S1_at1/118+14526433..14529102transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24290OsAffx.23366.2.S1_s_at1/118+14526433..14529102transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24300NANA8+14530555..14531231expressed protein
LOC_Os08g24310Os.54153.1.S1_at11/118+14540212..14546578Leucine Rich Repeat family protein, expressed
LOC_Os08g24320OsAffx.4814.1.S1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24320Os.24150.1.A1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24330Os.52481.1.S1_at11/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24330OsAffx.9230.1.S1_x_at6/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24340NANA8+14563219..14564014hypothetical protein
LOC_Os08g24350OsAffx.17125.1.S1_at11/118+14565592..14566607hypothetical protein
LOC_Os08g24350OsAffx.2524.2.S1_at2/118+14565592..14566607hypothetical protein
LOC_Os08g24360OsAffx.29328.1.S1_at9/118+14569922..14572334hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006415biological_processtranslational termination
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0003747molecular_functiontranslation release factor activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54153.1.S1_at--865--211Chr08:14542893..14542917 (25 bp)
ATATATGGCTAATGGCACCCTAGAG
LOC_Os08g24310
Os.54153.1.S1_at--473--9771Chr08:14542902..14542926 (25 bp)
TAATGGCACCCTAGAGAGCTGGATT
LOC_Os08g24310
Os.54153.1.S1_at--802--51Chr08:14543188..14543212 (25 bp)
ATTGCACCAGGTAACCACATTTTAC
LOC_Os08g24310
Os.54153.1.S1_at--1064--7151Chr08:14543220..14543244 (25 bp)
GTCTCTCCTCTTGAACAGGAAATTA
LOC_Os08g24310
Os.54153.1.S1_at--1032--6092Chr11:18393407..18393427 (21 bp)
GAGTGTTTTCCCTCCAAAAGTCACT
NONE
Os.54153.1.S1_at--994--2434Chr10:22394677..22394701 (25 bp)
AAAAGTCACTTCGTGCCGTGTCCTA
NONE
Os.54153.1.S1_at--1030--7431Chr08:14543323..14543347 (25 bp)
GTGTCCTACCGCAAAAACCGCGAAG
LOC_Os08g24310
Os.54153.1.S1_at--794--2611Chr08:14543338..14543362 (25 bp)
AACCGCGAAGTCACAGAGTCTTGTA
LOC_Os08g24310
Os.54153.1.S1_at--979--6093Chr08:14543353..14543377 (25 bp)
GAGTCTTGTAGCAAAATTTACCCTT
LOC_Os08g24310
Os.54153.1.S1_at--260--10371Chr08:14543379..14543403 (25 bp)
TTTTTTCTTTCATCCTAAGGGCTGT
LOC_Os08g24310
Os.54153.1.S1_at--1061--5571Chr08:14543429..14543453 (25 bp)
GAAATAGCACAATCTTGTACGGATT
LOC_Os08g24310
Target Sequence 
ATATATGGCTAATGGCACCCTAGAGAGCTGGATTTATTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAA
TAGCAGTGGACATAGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAAGCCT
AGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGCGAAGTTCCTTCCCACTCACAATTC
CACAAGTATTACTAGCTCTACAAGCTTAGGGGGACCAAGAGGCTCAATTGGATATATTGCACCAGGTAACCACATTTTAC
ATGATTTGTCTCTCCTCTTGAACAGGAAATTATTATTTTAATAGGTGCGGTGTCCACCAGCAAATTTTCAACTTTTGGGA
GTGTTTTCCCTCCAAAAGTCACTTCGTGCCGTGTCCTACCGCAAAAACCGCGAAGTCACAGAGTCTTGTAGCAAAATTTA
CCCTTTTTTTTTCTTTCATCCTAAGGGCTGTAATTTTTTTCTCTACTATATTTAATGAAATAGCACAATCTTGTACGGAT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis