Browse Element(s) Details


OsAffx.4814.1.S1_at

Description tigr:9634.m01236
TID=OsAffx.4814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1255011/11hypothetical protein
LOC_Os08g243201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12480Os.43764.1.A1_at11/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.7.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.2.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.3.S1_x_at1/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12490OsAffx.27584.1.S1_at11/116+6781327..6782881hypothetical protein
LOC_Os06g12500OsAffx.15391.1.S1_at11/116+6788041..6788851plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g12510OsAffx.4812.1.S1_at11/116+6789517..6791070pentatricopeptide, putative
LOC_Os06g12520OsAffx.4813.1.S1_at11/116+6792121..6792388hypothetical protein
LOC_Os06g12530Os.14007.1.S1_at11/116+6793152..6795998Nuclear migration protein nudC, putative, expressed
LOC_Os06g12540Os.50302.1.S1_at11/116+6795507..6797469pentatricopeptide, putative, expressed
LOC_Os06g12550OsAffx.4814.1.S1_at11/116+6800972..6801358hypothetical protein
LOC_Os06g12560OsAffx.28216.1.S1_at11/116+6807877..6810728Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12560Os.46458.2.S1_at2/116+6807877..6810728Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12570OsAffx.4815.1.S1_at11/116+6813709..6814191hypothetical protein
LOC_Os06g12580Os.49196.1.S1_at11/116+6815407..6818817expressed protein
LOC_Os06g12580Os.10184.1.S1_s_at11/116+6815407..6818817expressed protein
LOC_Os06g12590Os.14975.1.S2_at11/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12590Os.14975.1.S1_at11/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12590Os.12612.1.S1_at1/116+6821983..6831863Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4814.1.S1_at--1060--5892Chr08:14552156..14552182 (23 bp)
GAGCTCGTCGGCTCGACTGCAAGCA
LOC_Os08g24320
OsAffx.4814.1.S1_at--523--9451Chr06:6801258..6801282 (25 bp)
TCGGCTCGACTGCAAGCATCTTCCT
LOC_Os06g12550
OsAffx.4814.1.S1_at--707--711Chr06:6801132..6801156 (25 bp)
ATGATGACGCGCCTAGCTCGGTCCG
LOC_Os06g12550
OsAffx.4814.1.S1_at--1108--9991Chr06:6801119..6801143 (25 bp)
TAGCTCGGTCCGTGTGCAGTGCAGC
LOC_Os06g12550
OsAffx.4814.1.S1_at--398--2651Chr06:6801091..6801115 (25 bp)
AACCACCGTGGAAACGTCGCTGTGA
LOC_Os06g12550
OsAffx.4814.1.S1_at--32--2391Chr06:6801080..6801104 (25 bp)
AAACGTCGCTGTGAGGAGGCTCGCC
LOC_Os06g12550
OsAffx.4814.1.S1_at--252--6211Chr06:6801065..6801089 (25 bp)
GAGGCTCGCCGTCGTTATATATCTT
LOC_Os06g12550
OsAffx.4814.1.S1_at--1003--6771Chr06:6801052..6801076 (25 bp)
GTTATATATCTTCACGGCTACGGCC
LOC_Os06g12550
OsAffx.4814.1.S1_at--1059--8271Chr06:6801037..6801061 (25 bp)
GGCTACGGCCGGAGCTTACATTATT
LOC_Os06g12550
OsAffx.4814.1.S1_at--728--5911Chr06:6801026..6801050 (25 bp)
GAGCTTACATTATTGCCGTGCTGTC
LOC_Os06g12550
OsAffx.4814.1.S1_at--244--8711Chr06:6801005..6801029 (25 bp)
TGTCCATGGCCGTGTGCCCGTGTAC
LOC_Os06g12550
Target Sequence 
GAGCTCGTCGGCTCGACTGCAAGCATCTTCCTCCCCGACTCCGGCGCCGTTGCTCTCCTCCTCACCGTCGCCGTCCTCTT
CTTTCTCGCCGTCGCACTTCTCCAGCTCCAGGTGGCGGCAACCGGCGGCGATGATGATGACGCGCCTAGCTCGGTCCGTG
TGCAGTGCAGCCGCAACCACCGTGGAAACGTCGCTGTGAGGAGGCTCGCCGTCGTTATATATCTTCACGGCTACGGCCGG
AGCTTACATTATTGCCGTGCTGTCCATGGCCGTGTGCCCGTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis