Browse Element(s) Details


OsAffx.28216.1.S1_at

Description tigr:9634.m05044
TID=OsAffx.28216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY093797 At1g74410F1M20_9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1256011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12490OsAffx.27584.1.S1_at11/116+6781327..6782881hypothetical protein
LOC_Os06g12500OsAffx.15391.1.S1_at11/116+6788041..6788851plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g12510OsAffx.4812.1.S1_at11/116+6789517..6791070pentatricopeptide, putative
LOC_Os06g12520OsAffx.4813.1.S1_at11/116+6792121..6792388hypothetical protein
LOC_Os06g12530Os.14007.1.S1_at11/116+6793152..6795998Nuclear migration protein nudC, putative, expressed
LOC_Os06g12540Os.50302.1.S1_at11/116+6795507..6797469pentatricopeptide, putative, expressed
LOC_Os06g12550OsAffx.4814.1.S1_at11/116+6800972..6801358hypothetical protein
LOC_Os06g12560OsAffx.28216.1.S1_at11/116+6807877..6810728Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12560Os.46458.2.S1_at2/116+6807877..6810728Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12570OsAffx.4815.1.S1_at11/116+6813709..6814191hypothetical protein
LOC_Os06g12580Os.49196.1.S1_at11/116+6815407..6818817expressed protein
LOC_Os06g12580Os.10184.1.S1_s_at11/116+6815407..6818817expressed protein
LOC_Os06g12590Os.14975.1.S2_at11/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12590Os.14975.1.S1_at11/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12590Os.12612.1.S1_at1/116+6821983..6831863Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28216.1.S1_at--230--8711Chr06:6810168..6810192 (25 bp)
TGTCCTCTCCATTGAGATCCTTGAG
LOC_Os06g12560
OsAffx.28216.1.S1_at--655--3771Chr06:6810141..6810165 (25 bp)
CTCTCGCGCGTATTGGTGCCAAGAT
LOC_Os06g12560
OsAffx.28216.1.S1_at--351--2811Chr06:6810121..6810145 (25 bp)
AAGATCGATCAAGCTCGCCTGGTTC
LOC_Os06g12560
OsAffx.28216.1.S1_at--503--4471Chr06:6809808..6810129 (25 bp)
GCCTGGTTCATTGTCCATGGGTGAT
LOC_Os06g12560
OsAffx.28216.1.S1_at--700--4891Chr06:6809772..6809796 (25 bp)
GCTTATTCATGCTCGTTTTGTGCAA
LOC_Os06g12560
OsAffx.28216.1.S1_at--165--2091Chr06:6809728..6809751 (24 bp)
ACATATCACATATCGTTGGCAGGTT
LOC_Os06g12560
OsAffx.28216.1.S1_at--919--1391Chr06:6809453..6809477 (25 bp)
AGACGTTGTCAATGGTGCTGTACAT
LOC_Os06g12560
OsAffx.28216.1.S1_at--218--10691Chr06:6809412..6809436 (25 bp)
TTCCATCCGGAGAAGGGCTTTCAAA
LOC_Os06g12560
OsAffx.28216.1.S1_at--915--5591Chr06:6809375..6809399 (25 bp)
GAAATTGCCATACCATGTCGTGATA
LOC_Os06g12560
OsAffx.28216.1.S1_at--376--5571Chr06:6809326..6809350 (25 bp)
GAAAGTTTGTCTTGCCCTGTTTGCC
LOC_Os06g12560
OsAffx.28216.1.S1_at--280--5591Chr06:6808907..6808931 (25 bp)
GAAATGCTCTCACACTTTCCATCAG
LOC_Os06g12560
Target Sequence 
TGTCCTCTCCATTGAGATCCTTGAGGCCTCTCGCGCGTATTGGTGCCAAGATCGATCAAGCTCGCCTGGTTCATTGTCCA
TGGGTGATTTTGTAAAGCAGCTTATTCATGCTCGTTTTGTGCAAGAGCAGAATGAGGCATCAGGACATATCACATATCGT
TGGCAGGTTGGTATTGCAGACGTTGTCAATGGTGCTGTACATGAAATCCTAGGAGATGTTCCATCCGGAGAAGGGCTTTC
AAAATATTCTTTAATGAAATTGCCATACCATGTCGTGATAGATCATAATAATGGCTCAATTGGGGAAAGTTTGTCTTGCC
CTGTTTGCCTGCAGGATGTTGTGGCTGGACAGACGGTGAGGAGATTGCCGAAATGCTCTCACACTTTCCATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis