Browse Element(s) Details


OsAffx.4812.1.S1_at

Description tigr:9634.m01232
TID=OsAffx.4812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1251011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12470Os.33878.1.S1_at6/116+6763464..6771922expressed protein
LOC_Os06g12470OsAffx.21953.1.S1_at2/116+6763464..6771922expressed protein
LOC_Os06g12480Os.43764.1.A1_at11/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.7.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.2.S1_x_at3/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480OsAffx.24046.3.S1_x_at1/116+6777675..6780081hAT family dimerisation domain containing protein, expressed
LOC_Os06g12490OsAffx.27584.1.S1_at11/116+6781327..6782881hypothetical protein
LOC_Os06g12500OsAffx.15391.1.S1_at11/116+6788041..6788851plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g12510OsAffx.4812.1.S1_at11/116+6789517..6791070pentatricopeptide, putative
LOC_Os06g12520OsAffx.4813.1.S1_at11/116+6792121..6792388hypothetical protein
LOC_Os06g12530Os.14007.1.S1_at11/116+6793152..6795998Nuclear migration protein nudC, putative, expressed
LOC_Os06g12540Os.50302.1.S1_at11/116+6795507..6797469pentatricopeptide, putative, expressed
LOC_Os06g12550OsAffx.4814.1.S1_at11/116+6800972..6801358hypothetical protein
LOC_Os06g12560OsAffx.28216.1.S1_at11/116+6807877..6810728Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12560Os.46458.2.S1_at2/116+6807877..6810728Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12570OsAffx.4815.1.S1_at11/116+6813709..6814191hypothetical protein
LOC_Os06g12580Os.49196.1.S1_at11/116+6815407..6818817expressed protein
LOC_Os06g12580Os.10184.1.S1_s_at11/116+6815407..6818817expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4812.1.S1_at--332--991Chr06:6790036..6790060 (25 bp)
AGGAGGACTGGCCTTCCATGGACAA
LOC_Os06g12510
OsAffx.4812.1.S1_at--549--1431Chr06:6790009..6790033 (25 bp)
AGAACAATCTGTCCGATTCTTCAAG
LOC_Os06g12510
OsAffx.4812.1.S1_at--73--711Chr06:6789956..6789980 (25 bp)
ATGAGATTTCTTTCCTATGTGTACT
LOC_Os06g12510
OsAffx.4812.1.S1_at--219--791Chr06:6789940..6789964 (25 bp)
ATGTGTACTTGGTGCATGCAGCCAT
LOC_Os06g12510
OsAffx.4812.1.S1_at--65--5211Chr06:6789860..6789884 (25 bp)
GAATTGAGCCCAATGCGAGGCATTA
LOC_Os06g12510
OsAffx.4812.1.S1_at--1139--4911Chr06:6789817..6789841 (25 bp)
GCTTGGGCGTGCAGGCTTACTAGAT
LOC_Os06g12510
OsAffx.4812.1.S1_at--484--1051Chr06:6789765..6789789 (25 bp)
AGGTGTGAACCAAGTGCGGTCGTAT
LOC_Os06g12510
OsAffx.4812.1.S1_at--89--5451Chr06:6789716..6789740 (25 bp)
GAACCCATGGCAATATGACCCTAGG
LOC_Os06g12510
OsAffx.4812.1.S1_at--83--5191Chr06:6789651..6789675 (25 bp)
GCAAGTGCTGACTATGTTCTGCTCT
LOC_Os06g12510
OsAffx.4812.1.S1_at--979--9471Chr06:6789634..6789658 (25 bp)
TCTGCTCTCGGGAATTTATGCCTCA
LOC_Os06g12510
OsAffx.4812.1.S1_at--93--10311Chr06:6789620..6789644 (25 bp)
TTTATGCCTCATCTGGTGAATGGTT
LOC_Os06g12510
Target Sequence 
AGGAGGACTGGCCTTCCATGGACAAGCAGAACAATCTGTCCGATTCTTCAAGAAAATGCTCGAGAAGAGAATACACCCAA
ATGAGATTTCTTTCCTATGTGTACTTGGTGCATGCAGCCATGCTGGATTAGTTGAAGATGGTCAGAAATTTTTCTATCTG
ATGAAAGACAGGTATGGAATTGAGCCCAATGCGAGGCATTACAGTTGCATAGTAGACATGCTTGGGCGTGCAGGCTTACT
AGATGAAGCATATGCGATTGTGAGCAACATGAGGTGTGAACCAAGTGCGGTCGTATGGAGGACATTGCTTGGGGCCTGCA
GAACCCATGGCAATATGACCCTAGGCAAGCTTGTGAGGGAGAAGCTTCTAAACATGAATGAAGATGCAAGTGCTGACTAT
GTTCTGCTCTCGGGAATTTATGCCTCATCTGGTGAATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis