Browse Element(s) Details


Os.46458.2.S1_at

Description gb:NM_196668.1
DB_XREF= gi:37534695
TID=Os.46458.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46458 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cationic amino acid transporter -like protein (OSJNBb0040I11.4), mRNA.
PROD=putative cationic amino acid transporter -likeprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g300909/11Amino acid permease family protein, expressed
LOC_Os06g125602/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30054Os.21889.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054Os.47491.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054OsAffx.18460.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30070Os.46449.1.S1_at11/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30070OsAffx.11747.1.S1_x_at3/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30080Os.46676.1.A1_x_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_s_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080OsAffx.13408.1.S1_x_at1/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30109NANA10+15316196..15316562NA
LOC_Os10g30120NANA10+15319073..15319463laccase, putative
LOC_Os10g30130OsAffx.8091.1.S1_at11/1110+15320842..15327031retrotransposon protein, putative, unclassified
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46458.2.S1_at--1106--4591Chr10:15302073..15302097 (25 bp)
GCGACAAGCCTCAACTTCGAAGGTG
LOC_Os10g30090
Os.46458.2.S1_at--1042--5591Chr10:15302071..15302095 (25 bp)
GACAAGCCTCAACTTCGAAGGTGGT
LOC_Os10g30090
Os.46458.2.S1_at--283--1691Chr10:15302067..15302091 (25 bp)
AGCCTCAACTTCGAAGGTGGTCCAC
LOC_Os10g30090
Os.46458.2.S1_at--1064--3731Chr10:15302064..15302088 (25 bp)
CTCAACTTCGAAGGTGGTCCACCGT
LOC_Os10g30090
Os.46458.2.S1_at--1057--2031Chr10:15302060..15302084 (25 bp)
ACTTCGAAGGTGGTCCACCGTCCAG
LOC_Os10g30090
Os.46458.2.S1_at--339--8591Chr10:15302050..15302074 (25 bp)
TGGTCCACCGTCCAGCATCGGTTGA
LOC_Os10g30090
Os.46458.2.S1_at--580--5851Chr10:15302021..15302045 (25 bp)
GACCAGCCAAAGGAAGTAATGACAT
LOC_Os10g30090
Os.46458.2.S1_at--561--4391Chr10:15302016..15302040 (25 bp)
GCCAAAGGAAGTAATGACATCGAGG
LOC_Os10g30090
Os.46458.2.S1_at--708--4334Chr05:26391708..26391727 (20 bp)
CCAGATTGGCTTGTGTTGGAATTTC
NONE
Os.46458.2.S1_at--873--11Chr06:6809588..6809608 (21 bp)
ATTGGCTTGTGTTGGAATTTCTTTC
LOC_Os06g12560
Os.46458.2.S1_at--247--8291NONE
GGCTTGTGTTGGAATTTCTTTCTCC
NONE
Target Sequence 
GCGACAAGCCTCAACTTCGAAGGTGGTCCACCGTCCAGCATCGGTTGAGAGCGACCAGCCAAAGGAAGTAATGACATCGA
GGAGGGGCATAAGACTTCCAGATTGGCTTGTGTTGGAATTTCTTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46458.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis