Browse Element(s) Details


OsAffx.30603.4.S1_x_at

Description tigr:9629.m02648
TID=OsAffx.30603.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Multicopper oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2770011/11Multicopper oxidase family protein, expressed
LOC_Os10g301402/11Multicopper oxidase family protein
LOC_Os02g514401/11Multicopper oxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27650OsAffx.23420.1.S1_at11/111+15745777..15747984pentatricopeptide, putative
LOC_Os01g27660OsAffx.10637.4.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.1.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.3.S1_s_at3/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.2.S1_at1/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_x_at5/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_at3/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27680OsAffx.23421.1.S1_s_at11/111+15765890..15767242hypothetical protein
LOC_Os01g27690OsAffx.23421.2.S1_at9/111+15767883..15769001hypothetical protein
LOC_Os01g27700OsAffx.30603.4.S1_x_at11/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27700OsAffx.30603.2.S1_x_at1/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27710NANA1+15775867..15776478hypothetical protein
LOC_Os01g27720Os.19624.1.S1_at5/111+15780486..15784678zinc finger family protein, putative, expressed
LOC_Os01g27730Os.6742.1.S1_at11/111+15788950..15793626expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30603.4.S1_x_at--567--251Chr01:15773824..15773848 (25 bp)
ATAAATTGTGCGAGGGACCCCAAGG
LOC_Os01g27700
OsAffx.30603.4.S1_x_at--556--9331Chr01:15773857..15773881 (25 bp)
TCGCGGCGAGCCTCAATAATGTTAG
LOC_Os01g27700
OsAffx.30603.4.S1_x_at--873--2951Chr01:15773874..15773898 (25 bp)
AATGTTAGCTTCCAGAACCCGGCTA
LOC_Os01g27700
OsAffx.30603.4.S1_x_at--235--8371Chr01:15773937..15773961 (25 bp)
GGCGTGTACGAGGAGAACTTCCCCA
LOC_Os01g27700
OsAffx.30603.4.S1_x_at--489--1431Chr01:15773950..15773974 (25 bp)
AGAACTTCCCCAACAAGCTGACGGT
LOC_Os01g27700
OsAffx.30603.4.S1_x_at--309--1052Chr10:15331501..15331524 (24 bp)
AGGTGGTGTTCCAGGACTTGTCCAT
LOC_Os10g30140
OsAffx.30603.4.S1_x_at--1082--7772Chr10:15331579..15331603 (25 bp)
GGTCCGGAACCTTCGACGAGCGCAG
LOC_Os10g30140
OsAffx.30603.4.S1_x_at--690--4912Chr01:15774253..15774276 (24 bp)
GCTTCCGAGCAGACAATCCAGGTGT
LOC_Os01g27700
OsAffx.30603.4.S1_x_at--1053--3511Chr01:15774379..15774403 (25 bp)
CATGCATTGCCATTTTGATCGTCAC
LOC_Os01g27700
OsAffx.30603.4.S1_x_at--929--7991Chr01:15774414..15774438 (25 bp)
GGATGGACACTATGTTCATCGTGAA
LOC_Os01g27700
OsAffx.30603.4.S1_x_at--793--5171Chr01:15774444..15774468 (25 bp)
GCAAGACGCCGCAGGCTCAGATGCT
LOC_Os01g27700
Target Sequence 
ATAAATTGTGCGAGGGACCCCAAGGCAACCGGTTCGCGGCGAGCCTCAATAATGTTAGCTTCCAGAACCCGGCTATCGAC
GTCCTCGACGCCTACTACTACGGCTCCGGCCGCGGCGTGTACGAGGAGAACTTCCCCAACAAGCTGACGGTCATCGTCAA
CCCCACCGGCGACATCAACGGCGGCGGGCCCTTGCTAACGAAGCGTGGCACCAAGGTGAAGGTGCTGGAATATGGCACTG
TGGTGGAGGTGGTGTTCCAGGACTTGTCCATCGAGAACCACCCTATGCACCTGCACGGCTTCACCTTCTACGTCGTGGGA
CGAGGGTCCGGAACCTTCGACGAGCGCAGGGACCCAGCCACCTACAACCTCATCGACCCACCATTCCAGAACACTGTCTC
CGTGCCCAAGTCCAGCTGGGCCGCAATCCGCTTCCGAGCAGACAATCCAGGTGTGTGGTTCATGCATTGCCATTTTGATC
GTCACGTGGTGTGGGGGATGGACACTATGTTCATCGTGAAGGATGGCAAGACGCCGCAGGCTCAGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30603.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis