Browse Element(s) Details


Os.6742.1.S1_at

Description gb:AK103410.1
DB_XREF= gi:32988619
TID=Os.6742.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTPase (B1045D11.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128E17, full insert sequence.
FL= gb:AK103410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2773011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27680OsAffx.23421.1.S1_s_at11/111+15765890..15767242hypothetical protein
LOC_Os01g27690OsAffx.23421.2.S1_at9/111+15767883..15769001hypothetical protein
LOC_Os01g27700OsAffx.30603.4.S1_x_at11/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27700OsAffx.30603.2.S1_x_at1/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27710NANA1+15775867..15776478hypothetical protein
LOC_Os01g27720Os.19624.1.S1_at5/111+15780486..15784678zinc finger family protein, putative, expressed
LOC_Os01g27730Os.6742.1.S1_at11/111+15788950..15793626expressed protein
LOC_Os01g27740Os.22658.1.S1_at11/111+15801150..15805188DnaJ domain containing protein, expressed
LOC_Os01g27750Os.7136.1.S1_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27750Os.7136.2.S1_x_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6742.1.S1_at--421--10531Chr01:15789427..15789451 (25 bp)
TTCAGCGTGCTGACCGACATGGATG
LOC_Os01g27730
Os.6742.1.S1_at--1003--5651Chr01:15789412..15789436 (25 bp)
GACATGGATGCAGACTACGATTTCA
LOC_Os01g27730
Os.6742.1.S1_at--291--971Chr01:15789330..15789354 (25 bp)
AGGAGCCCAAGGAAGCTGACCCTAT
LOC_Os01g27730
Os.6742.1.S1_at--29--1611Chr01:15789317..15789341 (25 bp)
AGCTGACCCTATGACTGGTGTCGAT
LOC_Os01g27730
Os.6742.1.S1_at--765--7511Chr01:15789225..15789249 (25 bp)
GTGGACTGCCATCCCAAGTTTTGTA
LOC_Os01g27730
Os.6742.1.S1_at--385--4771Chr01:15789168..15789192 (25 bp)
GCTGCTTGATTCACATAGCCACTGA
LOC_Os01g27730
Os.6742.1.S1_at--1102--2231Chr01:15789100..15789124 (25 bp)
AAATTGCAAACCATCTTCCAGCGAT
LOC_Os01g27730
Os.6742.1.S1_at--69--4631Chr01:15789080..15789104 (25 bp)
GCGATCACTCTATTGTTTGGGCTGG
LOC_Os01g27730
Os.6742.1.S1_at--426--7731Chr01:15789057..15789081 (25 bp)
GGTGGAGAGCCGTGCCTATCAGTCT
LOC_Os01g27730
Os.6742.1.S1_at--269--411Chr01:15789040..15789064 (25 bp)
ATCAGTCTCGCATGATATCTCCGCG
LOC_Os01g27730
Os.6742.1.S1_at--833--10731Chr01:15788973..15788997 (25 bp)
TTGACATATCCTAGTTACCTCTTCT
LOC_Os01g27730
Target Sequence 
TTCAGCGTGCTGACCGACATGGATGCAGACTACGATTTCAAGGTGGATTATCANATGAAGGATGCCCNGGCCGAAGANGG
CAACGATGGTGGAGATGAGGAGCCCAAGGAAGCTGACCCTATGACTGGTGTCGATGATGCGTGAANTGATGGAACNNGGC
AGATTGAGAATACGAAGTANATCATATAATTATAATATGATGNNNGTGGACTGCCATCCCAAGTTTTGTACCCTATTAGT
TGAATGAGAGAAGATAATGGANGCTGCTTGATTCACATAGCCACTGAGCTGGAATCAGAATTTTTTNGCCCATATGCATG
CAATGGTTGCAAAATTGCAAACCATCTTCCAGCGATCACTCTATTGTTTGGGCTGGTGGAGAGCCGTGCCTATCAGTCTC
GCATGATATCTCCGCGACTGTCCTCTGTTGGGGCTAGCGAAAAATTCACAGGTAATGTTTGACATATCCTAGTTACCTCT
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis