Browse Element(s) Details


OsAffx.23421.1.S1_s_at

Description gb:NM_193862.1
DB_XREF= gi:34914807
GEN=B1045D11.16
TID=OsAffx.23421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1045D11.16 (B1045D11.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2768011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27640OsAffx.24866.1.S1_at10/111+15739981..15742657retrotransposon protein, putative, unclassified
LOC_Os01g27650OsAffx.23420.1.S1_at11/111+15745777..15747984pentatricopeptide, putative
LOC_Os01g27660OsAffx.10637.4.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.1.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.3.S1_s_at3/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.2.S1_at1/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_x_at5/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_at3/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27680OsAffx.23421.1.S1_s_at11/111+15765890..15767242hypothetical protein
LOC_Os01g27690OsAffx.23421.2.S1_at9/111+15767883..15769001hypothetical protein
LOC_Os01g27700OsAffx.30603.4.S1_x_at11/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27700OsAffx.30603.2.S1_x_at1/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27710NANA1+15775867..15776478hypothetical protein
LOC_Os01g27720Os.19624.1.S1_at5/111+15780486..15784678zinc finger family protein, putative, expressed
LOC_Os01g27730Os.6742.1.S1_at11/111+15788950..15793626expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23421.1.S1_s_at--929--5171Chr01:15766383..15766407 (25 bp)
GAATTTTCGTGATAGACCCACCCCG
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--539--8751Chr01:15766281..15766305 (25 bp)
TGTTTGGGTTCGCTTATCTGGTGAA
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--836--1331Chr01:15766247..15766271 (25 bp)
AGAGGTCTTGCTGATCGGTCACACT
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--347--891Chr01:15766206..15766230 (25 bp)
AGGCCGTGGTTTACAGACTTGCTGA
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--547--2311Chr01:15766119..15766143 (25 bp)
AAAGGAGCCTGTGTGTCTCCTCGAA
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--740--5291Chr01:15766097..15766121 (25 bp)
GAAGGCTGTTCCTGGCATTGCAGAT
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--298--9611Chr01:15766065..15766089 (25 bp)
TCATCTACAGGCACCACGGGAAATT
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--102--7631Chr01:15766048..15766072 (25 bp)
GGGAAATTCCTTGCACAATACCATG
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--269--10451Chr01:15766023..15766047 (25 bp)
TTAGAAGTGGCACCCTGTCGACAGC
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--794--5291Chr01:15765979..15766003 (25 bp)
GAAGGCTACAGACTGGCTCCGTACA
LOC_Os01g27680
OsAffx.23421.1.S1_s_at--477--1731Chr01:15765945..15765969 (25 bp)
ACCATCTTTTTGCTTGCTGTCTTAT
LOC_Os01g27680
Target Sequence 
GAATTTTCGTGATAGACCCACCCCGGGTGGAGGCGAATGGCTCTGCTTCGTCTTTTTCCCTACCAGAACCAAAATTGTTT
GCTACATGTCCAGTAGAAAAGCTGTTTGGGTTCGCTTATCTGGTGAACTGTGAATCAGAGGTCTTGCTGATCGGTCACAC
TGATCGCTCGTACTCGCAGGCCGTGGTTTACAGACTTGCTGACATTATCTTGGGAAGGTTCATCCCGTTAACAAGATTTG
GGGACTACACCATTTTCATGGATGAAAGGAGCCTGTGTGTCTCCTCGAAGGCTGTTCCTGGCATTGCAGATGGCTCTCTC
ATCTACAGGCACCACGGGAAATTCCTTGCACAATACCATGTTAGAAGTGGCACCCTGTCGACAGCTGCTGAGGGTAGAAT
CGAGGAAGGCTACAGACTGGCTCCGTACAGCCTCATCCACCATCTTTTTGCTTGCTGTCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23421.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis