Browse Element(s) Details


OsAffx.30603.2.S1_x_at

Description tigr:9638.m02584
TID=OsAffx.30603.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to laccase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3014011/11Multicopper oxidase family protein
LOC_Os01g277001/11Multicopper oxidase family protein, expressed
LOC_Os02g514401/11Multicopper oxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30109NANA10+15316196..15316562NA
LOC_Os10g30120NANA10+15319073..15319463laccase, putative
LOC_Os10g30130OsAffx.8091.1.S1_at11/1110+15320842..15327031retrotransposon protein, putative, unclassified
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30150Os.5338.1.S1_at11/1110+15334244..15335177universal stress protein family protein, expressed
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30603.2.S1_x_at--729--2311Chr10:15331254..15331278 (25 bp)
AACAAGTTGTGCAAGGGACCCCAAG
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--631--2931Chr10:15331276..15331300 (25 bp)
AAGGCAACCAGTTCGCGGCGAGCCT
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--509--2231Chr10:15331303..15331327 (25 bp)
ACAATGTTAGCTTCGAGAGCCCGGC
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--35--8012Chr10:15331379..15331403 (25 bp)
GGAGGACTTCCCCAACAAGCCGGTG
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--106--3251Chr10:15331391..15331415 (25 bp)
CAACAAGCCGGTGAATGCCTTCGTC
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--258--4031Chr10:15331427..15331451 (25 bp)
CGACAACGGCGGCAGGCCCTTGCTA
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--165--3611Chr10:15331445..15331469 (25 bp)
CTTGCTAACGAAGCGCGGCACCAAG
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--841--1611Chr10:15331524..15331548 (25 bp)
AGCGAGAACCATCCTATGCATCTGC
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--1081--7772Chr10:15331579..15331603 (25 bp)
GGTCCGGAACCTTCGACGAGCGCAG
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--516--4491Chr10:15331634..15331658 (25 bp)
GCCGTTCCAGAACACGGTCTCCGTG
LOC_Os10g30140
OsAffx.30603.2.S1_x_at--601--7171Chr10:15331650..15331674 (25 bp)
GTCTCCGTGCCCAAGTCAAGCTGGG
LOC_Os10g30140
Target Sequence 
AACAAGTTGTGCAAGGGACCCCAAGGCAACCAGTTCGCGGCGAGCCTCAACAATGTTAGCTTCGAGAGCCCGGCCATCGA
CGTCCTCGACGCCTACTACTACGGCTCCGGCCGCGGCGTGTACGAGGAGGACTTCCCCAACAAGCCGGTGAATGCCTTCG
TCAACCCCACCGGCGACAACGGCGGCAGGCCCTTGCTAACGAAGCGCGGCACCAAGGTGAAGGTGGTGGAGTACGGCACG
GTGGTAGAGGTGGTGTTCCAGGACTTGTCCAGCGAGAACCATCCTATGCATCTGCACGGCTTCGCCTTCTATGTCGTGGG
ACGAGGGTCCGGAACCTTCGACGAGCGCAGGGACCCGGCGACCTACAACCTCGTCGACCCGCCGTTCCAGAACACGGTCT
CCGTGCCCAAGTCAAGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30603.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis