Browse Element(s) Details


Os.46458.1.S1_at

Description gb:AK100205.1
DB_XREF= gi:32985414
TID=Os.46458.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cationic amino acid transporter -like protein (OSJNBb0040I11.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041E12, full insert sequence.
FL= gb:AK100205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3009011/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30054Os.21889.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054Os.47491.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054OsAffx.18460.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30070Os.46449.1.S1_at11/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30070OsAffx.11747.1.S1_x_at3/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30080Os.46676.1.A1_x_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_s_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080OsAffx.13408.1.S1_x_at1/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30109NANA10+15316196..15316562NA
LOC_Os10g30120NANA10+15319073..15319463laccase, putative
LOC_Os10g30130OsAffx.8091.1.S1_at11/1110+15320842..15327031retrotransposon protein, putative, unclassified
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46458.1.S1_at--239--191Chr10:15300366..15300390 (25 bp)
ATTTCACCTGCATAGATCACTGTGG
LOC_Os10g30090
Os.46458.1.S1_at--882--7911Chr10:15300340..15300364 (25 bp)
GGTTGTTCATCTGTACATGGCGATT
LOC_Os10g30090
Os.46458.1.S1_at--1094--7671Chr10:15300322..15300346 (25 bp)
GGCGATTAACTTGTACAGCTTCCGT
LOC_Os10g30090
Os.46458.1.S1_at--245--3352Chr11:12829378..12829397 (20 bp)
CAGCTTCCGTTGATTTTCCCTTTGA
NONE
Os.46458.1.S1_at--328--3131Chr10:15300280..15300304 (25 bp)
AATTTCACAGTTCCAATCTTCAATG
LOC_Os10g30090
Os.46458.1.S1_at--240--2431Chr10:15300248..15300272 (25 bp)
AAAAGTCTTGAAGCTCTCAGAGATC
LOC_Os10g30090
Os.46458.1.S1_at--545--6431Chr10:15300227..15300251 (25 bp)
GATCATCTCACAGAAATGGTCTTCA
LOC_Os10g30090
Os.46458.1.S1_at--785--2971Chr10:15300213..15300237 (25 bp)
AATGGTCTTCATGTGTAGCCCAGCG
LOC_Os10g30090
Os.46458.1.S1_at--234--6971Chr10:15300199..15300223 (25 bp)
GTAGCCCAGCGTGTTTTGAGCAAGA
LOC_Os10g30090
Os.46458.1.S1_at--1054--5111Chr10:15300136..15300160 (25 bp)
GCACAGCACATTGTGTAACTGCTTA
LOC_Os10g30090
Os.46458.1.S1_at--490--7051Chr10:15300089..15300113 (25 bp)
GTCAGTTTTGACAGTTTTACCATCA
LOC_Os10g30090
Target Sequence 
ATTTCACCTGCATAGATCACTGTGGGGGTTGTTCATCTGTACATGGCGATTAACTTGTACAGCTTCCGTTGATTTTCCCT
TTGACAAATTTCACAGTTCCAATCTTCAATGAACTATCAAAAGTCTTGAAGCTCTCAGAGATCATCTCACAGAAATGGTC
TTCATGTGTAGCCCAGCGTGTTTTGAGCAAGAATTCGAGCAAAAGCATAACAACAGTGGCAGCAGCAGAAGCACAGCACA
TTGTGTAACTGCTTAGAATTTTTTGTGTCTTTCTATAGTCAGTTTTGACAGTTTTACCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis