Browse Element(s) Details


OsAffx.18460.1.S1_at

Description tigr:9638.m02575
TID=OsAffx.18460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=flavodoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3005411/11ENT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30010OsAffx.29975.1.S1_at11/1110+15246837..15249502hypothetical protein
LOC_Os10g30020NANA10+15250778..15254368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30040Os.46868.3.S1_x_at11/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30040Os.46868.1.S1_x_at7/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30054Os.21889.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054Os.47491.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054OsAffx.18460.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30070Os.46449.1.S1_at11/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30070OsAffx.11747.1.S1_x_at3/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30080Os.46676.1.A1_x_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_s_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080OsAffx.13408.1.S1_x_at1/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18460.1.S1_at--1039--4751Chr10:15272192..15272216 (25 bp)
GCTGCGGCTGTACATCGTGTTCTAC
LOC_Os10g30054
OsAffx.18460.1.S1_at--506--8331Chr10:15272197..15272221 (25 bp)
GGCTGTACATCGTGTTCTACTCGAT
LOC_Os10g30054
OsAffx.18460.1.S1_at--633--9531Chr10:15272212..15272236 (25 bp)
TCTACTCGATGTACGGGCACGTGGA
LOC_Os10g30054
OsAffx.18460.1.S1_at--196--8071Chr10:15272333..15272357 (25 bp)
GGAGAAGATGCAGGCGCCGGCCAAG
LOC_Os10g30054
OsAffx.18460.1.S1_at--182--7891Chr10:15272422..15272446 (25 bp)
GGTTCCCGACGAGGTACGGCGCCAT
LOC_Os10g30054
OsAffx.18460.1.S1_at--888--1791Chr10:15273020..15273039 (20 bp)
ACCGCCATGATGCTTGCTGTTGCAC
LOC_Os10g30054
OsAffx.18460.1.S1_at--352--6671Chr10:15273033..15273057 (25 bp)
GTTGCACTCAATCTGTCTCTGTTCA
LOC_Os10g30054
OsAffx.18460.1.S1_at--997--471Chr10:15273043..15273067 (25 bp)
ATCTGTCTCTGTTCAGTGAGCGTGT
LOC_Os10g30054
OsAffx.18460.1.S1_at--708--8791Chr10:15273052..15273076 (25 bp)
TGTTCAGTGAGCGTGTGCGTTTACC
LOC_Os10g30054
OsAffx.18460.1.S1_at--8--3471Chr10:15273056..15273080 (25 bp)
CAGTGAGCGTGTGCGTTTACCTCTA
LOC_Os10g30054
OsAffx.18460.1.S1_at--701--4631Chr10:15273068..15273092 (25 bp)
GCGTTTACCTCTAGGACAGATTTAT
LOC_Os10g30054
Target Sequence 
GCTGCGGCTGTACATCGTGTTCTACTCGATGTACGGGCACGTGGAGGCGCTGGCGCGGCGGGCGGCGGCGGGCGTCGCGG
CGGTGGACGGGGTGGAGGCGGTGCTGCGGCGCGTCCCCGAGACGCTCCCGCCGGGCGTGCTGGAGAAGATGCAGGCGCCG
GCCAAGGACCCCGCCGTCCCGGTCATCGCGGCGGCGGCGGACCTGGAGGAGGCCGACGGGGTGCTGTTCGGGTTCCCGAC
GAGGTACGGCGCCATGGCCGCGCAGATGAAGGCGTTCTTCGACTCCACCGGCTCCCTCTGGGAGAAGCAGAAGCTCGCCG
GAAAGCCCGCCGGGTTCTTCGTCAGCACCGGCACGCAGGGAGGCGGCCAGGAGACCACCGCCATGATGCTTGCTGTTGCA
CTCAATCTGTCTCTGTTCAGTGAGCGTGTGCGTTTACCTCTAGGACAGATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis