Browse Element(s) Details


OsAffx.29975.1.S1_at

Description tigr:9638.m02571
TID=OsAffx.29975.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3001011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29970OsAffx.19542.3.S1_x_at5/1110+15223170..15227110retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29980Os.27691.1.S1_x_at1/1110+15232224..15236318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.2.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.1.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30000OsAffx.135.1.S1_at11/1110+15241580..15243472transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30010OsAffx.29975.1.S1_at11/1110+15246837..15249502hypothetical protein
LOC_Os10g30020NANA10+15250778..15254368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30040Os.46868.3.S1_x_at11/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30040Os.46868.1.S1_x_at7/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30054Os.21889.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054Os.47491.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054OsAffx.18460.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29975.1.S1_at--699--1131Chr10:15248744..15248768 (25 bp)
AGTGCGAAGAAGTCTGCCCTGGAAA
LOC_Os10g30010
OsAffx.29975.1.S1_at--145--2851Chr10:15248753..15248777 (25 bp)
AAGTCTGCCCTGGAAAGGCTGGATG
LOC_Os10g30010
OsAffx.29975.1.S1_at--798--9951Chr10:15248780..15248804 (25 bp)
TACCGGCTTCGGTTGCGGAAGGCCA
LOC_Os10g30010
OsAffx.29975.1.S1_at--667--2491Chr10:15249055..15249077 (23 bp)
AACAGGCTGGCCCTGAATGACCTTG
LOC_Os10g30010
OsAffx.29975.1.S1_at--785--2031Chr10:15249123..15249147 (25 bp)
ACTTTTCCGAGTGGACGCAAGAGTC
LOC_Os10g30010
OsAffx.29975.1.S1_at--1101--4831Chr10:15249226..15249250 (25 bp)
GCTACATACGCACGGTTGCGAGCAT
LOC_Os10g30010
OsAffx.29975.1.S1_at--663--8431Chr10:15249285..15249309 (25 bp)
GGCCTTTGAACTCGCAATGCTCTGG
LOC_Os10g30010
OsAffx.29975.1.S1_at--606--4251Chr10:15249355..15249379 (25 bp)
CCGGGATTGCGCGAAGACCAGCCTT
LOC_Os10g30010
OsAffx.29975.1.S1_at--783--1711Chr10:15249371..15249395 (25 bp)
ACCAGCCTTCGCGAGAATCTTGAGA
LOC_Os10g30010
OsAffx.29975.1.S1_at--117--3531Chr10:15249428..15249452 (25 bp)
CATGCCGGAGGAGACCCTGGGTCCA
LOC_Os10g30010
OsAffx.29975.1.S1_at--764--7271Chr10:15249448..15249472 (25 bp)
GTCCACGGAGCTAGCAGGCGAAGAC
LOC_Os10g30010
Target Sequence 
AGTGCGAAGAAGTCTGCCCTGGAAAGGCTGGATGGTTACCGGCTTCGGTTGCGGAAGGCCAAGGACGACCTTCGCCACAA
GGAGGACGAAAGGCGCGTCGTGGCGGACACCTTGTGGAGGGCGAATGCGGAGAACAGGCTGGCCCTGAATGACCTTGGTG
CTCGCGCGGAGGACACCCTGGGAGATGATGGGACGGCTTTCGACTTTTCCGAGTGGACGCAAGAGTCGGCCGGCTCAGTT
GTCGAAGTGGCCGGCGCTTATGGGGATTGTTGTGCTCGTGTTTCGGCGGGCTTCGTCCTTAGCCTGCTACATACGCACGG
TTGCGAGCATATCAGGGATTTTCCCCGCTATGTGACGGAAGAATGGCCTTTGAACTCGCAATGCTCTGGGGCGGCCTTAA
AGGCGTTCCGAAAGGGTTTCTGGGAGGACGGTGGCCGGGATTGCGCGAAGACCAGCCTTCGCGAGAATCTTGAGAGGATC
GCGAAGGAGGAGGAAGCTGCTGCCGTCCATGCCGGAGGAGACCCTGGGTCCACGGAGCTAGCAGGCGAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis