Browse Element(s) Details


Os.47491.1.S1_at

Description gb:NM_196665.1
DB_XREF= gi:37534689
TID=Os.47491.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0040I11.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0040I11.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3005411/11ENT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30010OsAffx.29975.1.S1_at11/1110+15246837..15249502hypothetical protein
LOC_Os10g30020NANA10+15250778..15254368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30040Os.46868.3.S1_x_at11/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30040Os.46868.1.S1_x_at7/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30054Os.21889.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054Os.47491.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054OsAffx.18460.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30070Os.46449.1.S1_at11/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30070OsAffx.11747.1.S1_x_at3/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30080Os.46676.1.A1_x_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_s_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080OsAffx.13408.1.S1_x_at1/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47491.1.S1_at--564--1031Chr10:15279284..15279308 (25 bp)
AGGTGAGAACCCTCTTGACTTGGAT
LOC_Os10g30054
Os.47491.1.S1_at--871--5511Chr10:15279400..15279424 (25 bp)
GAAAAGGTCCTTTTAGATGCAGTCC
LOC_Os10g30054
Os.47491.1.S1_at--357--8891Chr10:15279919..15279942 (24 bp)
TGAGGAGTGTTTCAGCACCAACTGC
LOC_Os10g30054
Os.47491.1.S1_at--55--1991Chr10:15279938..15279962 (25 bp)
ACTGCCAGCCAGATGAGTTCAACCA
LOC_Os10g30054
Os.47491.1.S1_at--212--2631Chr10:15280037..15280061 (25 bp)
AACCGGTGAGCCCAAGCGACAAGGA
LOC_Os10g30054
Os.47491.1.S1_at--745--1011Chr10:15280467..15280489 (23 bp)
AGGTTTTTTGCTGGAGACCTCTCAC
LOC_Os10g30054
Os.47491.1.S1_at--696--6951Chr10:15280835..15280859 (25 bp)
GTAGCATAGTACTATCCCTGCACTG
LOC_Os10g30054
Os.47491.1.S1_at--840--5571Chr10:15280868..15280892 (25 bp)
GAAAGTGGTCGCTGGCTGTGCCCAT
LOC_Os10g30054
Os.47491.1.S1_at--945--8691Chr10:15280884..15281111 (25 bp)
TGTGCCCATCTCCAGCATGGTTAAA
LOC_Os10g30054
Os.47491.1.S1_at--1087--7851Chr10:15281105..15281129 (25 bp)
GGTTAAACTGTACATTCATCACGGT
LOC_Os10g30054
Os.47491.1.S1_at--5--6131Chr10:15281142..15281166 (25 bp)
GAGTGGCTTACTCATGCAAGATCTA
LOC_Os10g30054
Target Sequence 
AGGTGAGAACCCTCTTGACTTGGATAACTCAGTATGAACAAGAAAAGGTCCTTTTAGATGCAGTCCTTAAGCTTTCTGAA
GTATCATATGTTGAGGAGTGTTTCAGCACCAACTGCCAGCCAGATGAGTTCAACCAGCACTATGAGTATGAGAGCGACGA
CGAGATGCCGCAGAAGACAGCGAGCACAAACGACGCCGAGACGCCACCAAAACCGGTGAGCCCAAGCGACAAGGAGGCGC
CTCCGCAGCCAGTGCCAGGACGTGGTGGTGGCGCCACCAGCAAGGTTTTTTGCTGGAGACCTCTCACCTCTGATCAGGCT
GCATTCTCAGGCAGCTTTAAGATGTTGCCTGCTAGTAGCATAGTACTATCCCTGCACTGCAGTTCTGGAAAGTGGTCGCT
GGCTGTGCCCATCTCCAGCATGGTTAAACTGTACATTCATCACGGTTTTGTGATGGCTGAGTGGCTTACTCATGCAAGAT
CTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis