Browse Element(s) Details


Os.51187.1.S1_s_at

Description gb:AK071270.1
DB_XREF= gi:32981293
TID=Os.51187.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087N08, full insert sequence.
FL= gb:AK061419.1 gb:AK071270.1 gb:AK105017.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3008011/11secondary cell wall-related glycosyltransferase family 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30054Os.21889.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054Os.47491.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054OsAffx.18460.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30070Os.46449.1.S1_at11/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30070OsAffx.11747.1.S1_x_at3/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30080Os.46676.1.A1_x_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_s_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080OsAffx.13408.1.S1_x_at1/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30109NANA10+15316196..15316562NA
LOC_Os10g30120NANA10+15319073..15319463laccase, putative

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51187.1.S1_s_at--587--3971Chr10:15294674..15294698 (25 bp)
CGGTGAACCACGACCTGCACTTCAT
LOC_Os10g30080
Os.51187.1.S1_s_at--1081--1751Chr10:15294686..15294710 (25 bp)
ACCTGCACTTCATCCGGTGGGACAG
LOC_Os10g30080
Os.51187.1.S1_s_at--278--5711Chr10:15294748..15294772 (25 bp)
GACTACCGCCGGATGCTGCTCAGCG
LOC_Os10g30080
Os.51187.1.S1_s_at--432--8111Chr10:15294801..15294825 (25 bp)
GGACGACCCCGTCCTGGACAGGATC
LOC_Os10g30080
Os.51187.1.S1_s_at--228--9271Chr10:15294812..15294836 (25 bp)
TCCTGGACAGGATCGACCGGGACAT
LOC_Os10g30080
Os.51187.1.S1_s_at--501--8131Chr10:15294816..15294840 (25 bp)
GGACAGGATCGACCGGGACATCCTC
LOC_Os10g30080
Os.51187.1.S1_s_at--631--911Chr10:15294907..15294931 (25 bp)
AGGCTGTGCTCCAACCCGCAGGAGG
LOC_Os10g30080
Os.51187.1.S1_s_at--77--331Chr10:15294949..15294973 (25 bp)
ATAAAGGCCGGTGCAGGGTCCAGGA
LOC_Os10g30080
Os.51187.1.S1_s_at--132--3491Chr10:15295017..15295041 (25 bp)
CAGGAGGCAGCAGTGTAGGTGAAAC
LOC_Os10g30080
Os.51187.1.S1_s_at--221--10491Chr10:15295118..15295142 (25 bp)
TTACAGGAAGAATTTGAGGCAGTTT
LOC_Os10g30080
Os.51187.1.S1_s_at--894--5651Chr10:15295174..15295198 (25 bp)
GACAGTGTAATCTCACAGAAATAAG
LOC_Os10g30080
Target Sequence 
CGGTGAACCACGACCTGCACTTCATCCGGTGGGACAGCCCGCCCAAGCAGCACCCGCTCTACCTCGGCCCCAGGGACTAC
CGCCGGATGCTGCTCAGCGCCGCGCCCTTCGCCAGGAAGTTCAGGGAGGACGACCCCGTCCTGGACAGGATCGACCGGGA
CATCCTCCGCCGCGACGGCGCCGCCCCGGGCCGGGCTTTCGCCTACGGCGGGTGGTGCTCCGAGGGGGGCGTCAGGCTGT
GCTCCAACCCGCAGGAGGCCGGGAGGAAGGGCATGATAAAGGCCGGTGCAGGGTCCAGGAGGCTCAGGGCCATGCTCAAC
AAGATGATGAATGCGAGAAATTTCAGGAGGCAGCAGTGTAGGTGAAACTAGAGGCATTTTTATATACAGTCTAATTCTGA
TGATCAGTGTGTGTGTTCATGTATATAATAGAGGAGAAATCGAATTACAGGAAGAATTTGAGGCAGTTTTGGTTGTCTGG
AGGGAGGTTAAAAGTAGAGTGACAGTGTAATCTCACAGAAATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51187.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis