Browse Element(s) Details


Os.46449.1.S1_at

Description gb:AK100938.1
DB_XREF= gi:32986147
TID=Os.46449.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative potassium-dependent sodium-calcium exchanger (OSJNBb0040I11.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138B21, full insert sequence.
FL= gb:AK100938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3007011/11Sodium/calcium exchanger protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30040Os.46868.3.S1_x_at11/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30040Os.46868.1.S1_x_at7/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30054Os.21889.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054Os.47491.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054OsAffx.18460.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30070Os.46449.1.S1_at11/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30070OsAffx.11747.1.S1_x_at3/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30080Os.46676.1.A1_x_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_s_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080OsAffx.13408.1.S1_x_at1/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005432molecular_functioncalcium:sodium antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46449.1.S1_at--889--9391Chr10:15286142..15286166 (25 bp)
TCGTCATGAGCGTGGCCTGGGCGTA
LOC_Os10g30070
Os.46449.1.S1_at--1129--3911Chr10:15286205..15286229 (25 bp)
CGGCGCACGTCATGGGCGTCGACTC
LOC_Os10g30070
Os.46449.1.S1_at--289--9451Chr10:15286385..15286409 (25 bp)
TCGGCGTGTCGATGTTGCTGTCGTC
LOC_Os10g30070
Os.46449.1.S1_at--523--6651Chr10:15286398..15286422 (25 bp)
GTTGCTGTCGTCGTGGGCCTCGCAT
LOC_Os10g30070
Os.46449.1.S1_at--534--891Chr10:15286448..15286472 (25 bp)
AGGCCGGCCCATTCCAGACGCTGGG
LOC_Os10g30070
Os.46449.1.S1_at--842--7671Chr10:15286546..15286570 (25 bp)
GGGTTTGGGCTCCTGGCCATTTACT
LOC_Os10g30070
Os.46449.1.S1_at--529--8431Chr10:15286560..15286584 (25 bp)
GGCCATTTACTTGTGCTTTCTTTGC
LOC_Os10g30070
Os.46449.1.S1_at--392--4891Chr10:15286574..15286598 (25 bp)
GCTTTCTTTGCATCAACATTTCTCA
LOC_Os10g30070
Os.46449.1.S1_at--196--9711Chr10:15286586..15286610 (25 bp)
TCAACATTTCTCAGGCACTTGGACC
LOC_Os10g30070
Os.46449.1.S1_at--382--8451Chr10:15286659..15286683 (25 bp)
TGGCCACCATTTTGTGTTGGCCCCT
LOC_Os10g30070
Os.46449.1.S1_at--506--9291Chr10:15286683..15286707 (25 bp)
TCCGCGCATTGCAACGAAAATTTTA
LOC_Os10g30070
Target Sequence 
TCGTCATGAGCGTGGCCTGGGCGTACGCCGTGGCGACCGAGCTCCTCGCGCTGCTGGTCTCCGCGGCGCACGTCATGGGC
GTCGACTCGGCGGCGCTGGGGCTCACCGTGCTCGCGTGGGGGAACTCCCTGGGCGACCTCGTCGCCAACCTCGCCGTGGC
GTCGCGCGGCGGCGGCGGCGGGGGCGCGCAGGTGGCCGTGGCCGGGTGCTACGGCGGGCCGGTGTTCGACGTGCTCGTGG
GCCTCGGCGTGTCGATGTTGCTGTCGTCGTGGGCCTCGCATCCGCGGCCCGTGGCAATGCCGGCGGAGGCCGGCCCATTC
CAGACGCTGGGCTTCGCCGCCGCGGGGATTTGCTGGGCCGTGGTGGTGATGTCCAGGAGAGGGATGAGGGTGGACAGNAC
GCTGGGGTTTGGGCTCCTGGCCATTTACTTGTGCTTTCTTTGCATCAACATTTCTCAGGCACTTGGACCGGNANGANNNN
TTNNNANNTTNTNNANNNNNNNNNNNNNGGGCCCGGTTGGCCACCATTTTGTGTTGGCCCCTCCGCGCATTGCAACGAAA
ATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis