Browse Element(s) Details


Os.46676.1.A1_x_at

Description gb:CB657474
DB_XREF= gi:29661199
DB_XREF=OSJNEc12N07.r
CLONE=OSJNEc12N07
TID=Os.46676.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lycosylation enzyme-like protein (OSJNBb0040I11.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3008011/11secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os01g430301/11TPR Domain containing protein, expressed
LOC_Os03g485601/11BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os07g071801/11N-terminal acetyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30054Os.21889.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054Os.47491.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054OsAffx.18460.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30070Os.46449.1.S1_at11/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30070OsAffx.11747.1.S1_x_at3/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30080Os.46676.1.A1_x_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_s_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080Os.51187.1.S1_at11/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30080OsAffx.13408.1.S1_x_at1/1110+15291962..15295273secondary cell wall-related glycosyltransferase family 14, putative, expressed
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30109NANA10+15316196..15316562NA
LOC_Os10g30120NANA10+15319073..15319463laccase, putative

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46676.1.A1_x_at--552--9531Chr10:15294626..15294650 (25 bp)
TCTACTTCCAGACGCTGGCCTGCAA
LOC_Os10g30080
Os.46676.1.A1_x_at--706--8352Chr10:15294656..15294680 (25 bp)
GGCGGTTCAGGAACACCACGGTGAA
LOC_Os10g30080
Os.46676.1.A1_x_at--586--3971Chr10:15294674..15294698 (25 bp)
CGGTGAACCACGACCTGCACTTCAT
LOC_Os10g30080
Os.46676.1.A1_x_at--1080--1751Chr10:15294686..15294710 (25 bp)
ACCTGCACTTCATCCGGTGGGACAG
LOC_Os10g30080
Os.46676.1.A1_x_at--277--5711Chr10:15294748..15294772 (25 bp)
GACTACCGCCGGATGCTGCTCAGCG
LOC_Os10g30080
Os.46676.1.A1_x_at--837--3631Chr10:15294780..15294804 (25 bp)
CTTCGCCAGGAAGTTCAGGGAGGAC
LOC_Os10g30080
Os.46676.1.A1_x_at--227--9271Chr10:15294812..15294836 (25 bp)
TCCTGGACAGGATCGACCGGGACAT
LOC_Os10g30080
Os.46676.1.A1_x_at--632--911Chr10:15294907..15294931 (25 bp)
AGGCTGTGCTCCAACCCGCAGGAGG
LOC_Os10g30080
Os.46676.1.A1_x_at--700--1413Chr10:15295009..15295033 (25 bp)
AGAAATTTCAGGAGGCAGCAGTGTA
LOC_Os10g30080
Os.46676.1.A1_x_at--1159--10591Chr10:15295068..15295092 (25 bp)
TTCTGATGATCAGTGTGTGTGTTCA
LOC_Os10g30080
Os.46676.1.A1_x_at--172--5211Chr10:15295127..15295151 (25 bp)
GAATTTGAGGCAGTTTTGGTTGTCT
LOC_Os10g30080
Target Sequence 
TCTACTTCCAGACGCTGGCCTGCAACTCCCGGCGGTTCAGGAACACCACGGTGAACCACGACCTGCACTTCATCCGGTGG
GACAGCCCGCCCAAGCAGCACCCGCTCTACCTCGGCCCCAGGGACTACCGCCGGATGCTGCTCAGCGCCGCGCCCTTCGC
CAGGAAGTTCAGGGAGGACGACCCCGTCCTGGACAGGATCGACCGGGACATCCTCCGCCGCGACGGCGCCGCCCCGGGCC
GGGCTTTCGCCTACGGCGGGTGGTGCTCCGAGGGGGGCGTCAGGCTGTGCTCCAACCCGCAGGAGGCCGGGAGGAAGGGC
ATGATAAAGGCCGGTGCAGGGTCCAGGAGGCTCAGGGCCATGCTCAACAAGATGATGAATGCGAGAAATTTCAGGAGGCA
GCAGTGTAGGTGAAACTAGAGGCATTTTTATATACAGTCTAATTCTGATGATCAGTGTGTGTGTTCATGTATATAATAGA
GGAGAAATCGAATTACAGGAAGAATTTGAGGCAGTTTTGGTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46676.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis