Browse Element(s) Details


Os.46868.3.S1_x_at

Description gb:NM_196664.1
DB_XREF= gi:37534687
TID=Os.46868.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46868 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0012D19.25), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3004011/11BTB/POZ domain containing protein
LOC_Os10g298506/11BTB/POZ domain containing protein
LOC_Os10g297402/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30000OsAffx.135.1.S1_at11/1110+15241580..15243472transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30010OsAffx.29975.1.S1_at11/1110+15246837..15249502hypothetical protein
LOC_Os10g30020NANA10+15250778..15254368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30040Os.46868.3.S1_x_at11/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30040Os.46868.1.S1_x_at7/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30054Os.21889.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054Os.47491.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30054OsAffx.18460.1.S1_at11/1110+15271726..15281201ENT domain containing protein, expressed
LOC_Os10g30070Os.46449.1.S1_at11/1110+15284817..15286710Sodium/calcium exchanger protein, expressed
LOC_Os10g30070OsAffx.11747.1.S1_x_at3/1110+15284817..15286710Sodium/calcium exchanger protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46868.3.S1_x_at--539--151Chr10:15264222..15264246 (25 bp)
ATTATGGTGATCTCCTCGTAAGCAA
LOC_Os10g30040
Os.46868.3.S1_x_at--32--2932Chr10:15264195..15264219 (25 bp)
AAGGCACCGATGTCAAGTTCCTGGT
LOC_Os10g30040
Os.46868.3.S1_x_at--89--8251Chr10:15264131..15264155 (25 bp)
GGCACGGTCACTGGTCTTCAAGGCA
LOC_Os10g30040
Os.46868.3.S1_x_at--576--2933Chr10:15133973..15134080 (25 bp)
AAGGCAGAGCTTTTCGGGCCGACGA
LOC_Os10g29740
Os.46868.3.S1_x_at--718--3611Chr10:15264025..15264049 (25 bp)
CTTGGGTTCATCTACACAGACATTT
LOC_Os10g30040
Os.46868.3.S1_x_at--518--752Chr10:15263973..15263997 (25 bp)
ATGTAGCTATGGCTCAACAGTTGCT
LOC_Os10g30040
Os.46868.3.S1_x_at--663--2492Chr10:15263958..15263982 (25 bp)
AACAGTTGCTTGCTGCTGCAGACAG
LOC_Os10g30040
Os.46868.3.S1_x_at--278--3571Chr10:15263874..15263898 (25 bp)
CATACTCAGTGTCAACCATGTTGGT
LOC_Os10g30040
Os.46868.3.S1_x_at--921--2912Chr10:15263818..15263842 (25 bp)
AAGGAGGCATGCTCTACGTTCCTTA
LOC_Os10g30040
Os.46868.3.S1_x_at--678--9932Chr10:15134364..15134388 (25 bp)
TACGTTCCTTAGTTCCATGAGCCCT
LOC_Os10g29740
Os.46868.3.S1_x_at--1074--672Chr10:15263788..15263812 (25 bp)
ATGAGCCCTCCTATTGTTGAAGATC
LOC_Os10g30040
Target Sequence 
ATTATGGTGATCTCCTCGTAAGCAAAGAAGGCACCGATGTCAAGTTCCTGGTCGGTGGCGAGATGTTTGCGGCGCACCGG
TTGGTGCTGGCGGCACGGTCACTGGTCTTCAAGGCAGAGCTTTTCGGGCCGACGAAGAAAGGCACCATAGATGCGATACA
GATTGACAACATGAAAGCACGAGTGTTCAAGGCTCTACTTGGGTTCATCTACACAGACATTTGGCCAGAGATAGGTCATG
GAAAAGACAATGTAGCTATGGCTCAACAGTTGCTTGCTGCTGCAGACAGGTATGGCTTACAGAGGTTAAAGTTTGTCTAC
GAAGATAAGTTGTGCAACCACATTGATACATACTCAGTGTCAACCATGTTGGTGCTAGTGGAGAAGCACCATTGTTGCAA
ACTCAAGGAGGCATGCTCTACGTTCCTTAGTTCCATGAGCCCTCCTATTGTTGAAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46868.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis