Browse Element(s) Details


OsAffx.135.1.S1_at

Description gb:NM_196661.1
DB_XREF= gi:37534681
TID=OsAffx.135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative TNP-like transposable element (OSJNBa0012D19.22), mRNA.
PROD=putative TNP-like transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3000011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g426002/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29950OsAffx.20312.1.S1_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.1.S1_x_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.4.S1_x_at5/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.2.S1_x_at2/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29960OsAffx.30600.1.S1_at9/1110+15219463..15221542hypothetical protein
LOC_Os10g29970OsAffx.19542.3.S1_x_at5/1110+15223170..15227110retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29980Os.27691.1.S1_x_at1/1110+15232224..15236318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.2.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.1.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30000OsAffx.135.1.S1_at11/1110+15241580..15243472transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30010OsAffx.29975.1.S1_at11/1110+15246837..15249502hypothetical protein
LOC_Os10g30020NANA10+15250778..15254368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30040Os.46868.3.S1_x_at11/1110+15263669..15264791BTB/POZ domain containing protein
LOC_Os10g30040Os.46868.1.S1_x_at7/1110+15263669..15264791BTB/POZ domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.135.1.S1_at--757--2431Chr10:15242958..15242982 (25 bp)
AAAAGACCGTGTACATGCGGCATCG
LOC_Os10g30000
OsAffx.135.1.S1_at--784--611Chr10:15242972..15242996 (25 bp)
ATGCGGCATCGGAGGTTTCTTCCAG
LOC_Os10g30000
OsAffx.135.1.S1_at--929--4471Chr10:15242996..15243020 (25 bp)
GCCGGCCACCACTATTGTAGCAATA
LOC_Os10g30000
OsAffx.135.1.S1_at--556--3231Chr10:15243021..15243045 (25 bp)
CAAGAGATTTCGATGGCACTGTGGA
LOC_Os10g30000
OsAffx.135.1.S1_at--773--6132Chr11:25140350..25140547 (25 bp)
GAGGGTACAGCTCCAACACAACGTG
LOC_Os11g42600
OsAffx.135.1.S1_at--527--5571Chr10:15243211..15243235 (25 bp)
GAAAGATTTGGATGTCCGCCATACA
LOC_Os10g30000
OsAffx.135.1.S1_at--997--4591Chr10:15243267..15243291 (25 bp)
GCGAGACTTTGATGGGAATCCTGCT
LOC_Os10g30000
OsAffx.135.1.S1_at--206--5271Chr10:15243282..15243306 (25 bp)
GAATCCTGCTAAACATACCTGGCAA
LOC_Os10g30000
OsAffx.135.1.S1_at--112--5371Chr10:15243330..15243354 (25 bp)
GAAGAGACCTCGTAGACATGAACAT
LOC_Os10g30000
OsAffx.135.1.S1_at--543--1352Chr11:25140646..25140669 (24 bp)
AGACATGAACATCAGGCCCGAGCTC
LOC_Os11g42600
OsAffx.135.1.S1_at--434--2751Chr10:15243375..15243399 (25 bp)
AAGAACGTCACAATGGCCGCCAGTA
LOC_Os10g30000
Target Sequence 
AAAAGACCGTGTACATGCGGCATCGGAGGTTTCTTCCAGCCGGCCACCACTATTGTAGCAATACAAGAGATTTCGATGGC
ACTGTGGAGGAGGGTACAGCTCCAACACAACGTGAGGGCAGAGACATTTTCAATGAGGTGAAAGATATTGAATGTATATT
TGGTAAGGGGCCTAGCAGTACAAGCGCAACGAGTAAGGGTGGTGAGAAACCTTTTCGGAAGAAGAAATCTATCTTTTGGG
GACTACCATATTGGAAAGATTTGGATGTCCGCCATACAATCGACGTGATGCACGTTGAGAAGAATATGTGCGAGACTTTG
ATGGGAATCCTGCTAAACATACCTGGCAAGACAAAGGATACGTTGAACGCACGAAGAGACCTCGTAGACATGAACATCAG
GCCCGAGCTCCATCCTCAAGAACGTCACAATGGCCGCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis