Browse Element(s) Details


OsAffx.20312.1.S1_at

Description tigr:9638.m02565
TID=OsAffx.20312.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2995011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29870NANA10+15191955..15192440expressed protein
LOC_Os10g29880OsAffx.30596.1.S1_at11/1110+15194900..15196610hypothetical protein
LOC_Os10g29900OsAffx.30598.1.S1_at11/1110+15202274..15202684hypothetical protein
LOC_Os10g29920OsAffx.30599.2.S1_x_at11/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.4.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920Os.53704.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29930NANA10+15211347..15213308hypothetical protein
LOC_Os10g29940NANA10+15215528..15215812hypothetical protein
LOC_Os10g29950OsAffx.20312.1.S1_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.1.S1_x_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.4.S1_x_at5/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.2.S1_x_at2/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29960OsAffx.30600.1.S1_at9/1110+15219463..15221542hypothetical protein
LOC_Os10g29970OsAffx.19542.3.S1_x_at5/1110+15223170..15227110retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29980Os.27691.1.S1_x_at1/1110+15232224..15236318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.2.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.1.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30000OsAffx.135.1.S1_at11/1110+15241580..15243472transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20312.1.S1_at--281--3791Chr10:15217396..15217420 (25 bp)
CTGCGTAGAAATATTGAGTAACCAC
LOC_Os10g29950
OsAffx.20312.1.S1_at--123--4651Chr10:15217394..15217418 (25 bp)
GCGTAGAAATATTGAGTAACCACAT
LOC_Os10g29950
OsAffx.20312.1.S1_at--55--3431Chr10:15217393..15217417 (25 bp)
CGTAGAAATATTGAGTAACCACATT
LOC_Os10g29950
OsAffx.20312.1.S1_at--386--231Chr10:15217386..15217410 (25 bp)
ATATTGAGTAACCACATTGATGCCA
LOC_Os10g29950
OsAffx.20312.1.S1_at--661--10231Chr10:15217385..15217409 (25 bp)
TATTGAGTAACCACATTGATGCCAA
LOC_Os10g29950
OsAffx.20312.1.S1_at--815--51Chr10:15217384..15217408 (25 bp)
ATTGAGTAACCACATTGATGCCAAC
LOC_Os10g29950
OsAffx.20312.1.S1_at--406--10751Chr10:15217383..15217407 (25 bp)
TTGAGTAACCACATTGATGCCAACT
LOC_Os10g29950
OsAffx.20312.1.S1_at--971--8891Chr10:15217382..15217406 (25 bp)
TGAGTAACCACATTGATGCCAACTC
LOC_Os10g29950
OsAffx.20312.1.S1_at--180--6091Chr10:15217381..15217405 (25 bp)
GAGTAACCACATTGATGCCAACTCC
LOC_Os10g29950
OsAffx.20312.1.S1_at--1001--331Chr10:15217331..15217355 (25 bp)
ATAAGCACCATTGCTATGGTCTCAG
LOC_Os10g29950
OsAffx.20312.1.S1_at--673--9791Chr10:15217330..15217354 (25 bp)
TAAGCACCATTGCTATGGTCTCAGG
LOC_Os10g29950
Target Sequence 
CTGCGTAGAAATATTGAGTAACCACATTGATGCCAACTCCGTGGCAACCATCTTGGTGCTAGCTGATAAGCACCATTGCT
ATGGTCTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis