Browse Element(s) Details


OsAffx.20312.1.S1_x_at

Description tigr:9638.m02565
TID=OsAffx.20312.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2995011/11BTB/POZ domain containing protein
LOC_Os10g297906/11BTB/POZ domain containing protein
LOC_Os10g298101/11BTB/POZ domain containing protein
LOC_Os10g299201/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29870NANA10+15191955..15192440expressed protein
LOC_Os10g29880OsAffx.30596.1.S1_at11/1110+15194900..15196610hypothetical protein
LOC_Os10g29900OsAffx.30598.1.S1_at11/1110+15202274..15202684hypothetical protein
LOC_Os10g29920OsAffx.30599.2.S1_x_at11/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.4.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920Os.53704.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29930NANA10+15211347..15213308hypothetical protein
LOC_Os10g29940NANA10+15215528..15215812hypothetical protein
LOC_Os10g29950OsAffx.20312.1.S1_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.1.S1_x_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.4.S1_x_at5/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.2.S1_x_at2/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29960OsAffx.30600.1.S1_at9/1110+15219463..15221542hypothetical protein
LOC_Os10g29970OsAffx.19542.3.S1_x_at5/1110+15223170..15227110retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29980Os.27691.1.S1_x_at1/1110+15232224..15236318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.2.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.1.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30000OsAffx.135.1.S1_at11/1110+15241580..15243472transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20312.1.S1_x_at--411--9952Chr10:15157373..15157397 (25 bp)
TACGCCACCGATGTTGAGTTCCTAG
LOC_Os10g29790
OsAffx.20312.1.S1_x_at--722--6055Chr10:15157388..15157412 (25 bp)
GAGTTCCTAGTTGGCGGCGAGACCT
LOC_Os10g29790
OsAffx.20312.1.S1_x_at--309--9632Chr10:15157455..15157479 (25 bp)
TCATGGTGGAGCTTTTTGGGCCGAT
LOC_Os10g29790
OsAffx.20312.1.S1_x_at--754--4512Chr10:15217461..15217485 (25 bp)
GCCGCAATGGCTCAACATCTACTTG
LOC_Os10g29950
OsAffx.20312.1.S1_x_at--866--2092Chr10:15157612..15157636 (25 bp)
ACATCTACTTGTTGCAGCGGATAAG
LOC_Os10g29790
OsAffx.20312.1.S1_x_at--405--10751Chr10:15217383..15217407 (25 bp)
TTGAGTAACCACATTGATGCCAACT
LOC_Os10g29950
OsAffx.20312.1.S1_x_at--590--3251Chr10:15217352..15217376 (25 bp)
CAACCATCTTGGTGCTAGCTGATAA
LOC_Os10g29950
OsAffx.20312.1.S1_x_at--672--9791Chr10:15217330..15217354 (25 bp)
TAAGCACCATTGCTATGGTCTCAGG
LOC_Os10g29950
OsAffx.20312.1.S1_x_at--661--8011Chr10:15217306..15217330 (25 bp)
GGAGGCATGCTTTGACTTCCTTAAC
LOC_Os10g29950
OsAffx.20312.1.S1_x_at--943--3632Chr10:15157769..15157792 (24 bp)
CTTCCTTAACTCCTCAGCAATATTG
LOC_Os10g29790
OsAffx.20312.1.S1_x_at--451--8852Chr10:15157827..15157902 (25 bp)
TGATCCAAAGCTGCCCTGATATTTT
LOC_Os10g29790
Target Sequence 
TACGCCACCGATGTTGAGTTCCTAGTTGGCGGCGAGACCTTCGCCGCGCATCGATTGGTGCTCGCAGCACGATCCCCTGT
CTTCATGGTGGAGCTTTTTGGGCCGATGAAGGAGAGTACTACTGTAAACAAGATACAAATATTTGATATGGAGGCGCAAG
TGTTTAGGGTTTTACTTAAGTTTATCTACATAGACATGTTGCCGGAGATGGATCAAGAAGATGAGGCCGCAATGGCTCAA
CATCTACTTGTTGCAGCGGATAAGTATGGCCTGCATAGGCTGAAGATGATCTGCGTAGAAATATTGAGTAACCACATTGA
TGCCAACTCCGTGGCAACCATCTTGGTGCTAGCTGATAAGCACCATTGCTATGGTCTCAGGGAGGCATGCTTTGACTTCC
TTAACTCCTCAGCAATATTGTCTGCGATTGTAAATACAAGTGACTTTCAGTATTTGATCCAAAGCTGCCCTGATATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20312.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis