Browse Element(s) Details


Os.46868.1.S1_x_at

Description gb:AK106669.1
DB_XREF= gi:32991878
TID=Os.46868.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative polyprotein (OSJNBa0012D19.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H11, full insert sequence.
FL= gb:AK106669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g298508/11BTB/POZ domain containing protein
LOC_Os10g300407/11BTB/POZ domain containing protein
LOC_Os10g297404/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein
LOC_Os10g29810OsAffx.30599.1.S1_at11/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.30599.2.S1_x_at9/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.4.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.1.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29820OsAffx.20312.3.S1_x_at9/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.3.S1_at7/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.4.S1_x_at1/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29830OsAffx.20312.2.S1_x_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29830OsAffx.20312.2.S1_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29840OsAffx.20311.1.S1_x_at11/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29840OsAffx.20311.2.S1_at1/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.1.S1_x_at8/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.3.S1_x_at6/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29860Os.46868.2.S1_x_at11/1110+15188239..15189285hypothetical protein
LOC_Os10g29870NANA10+15191955..15192440expressed protein
LOC_Os10g29880OsAffx.30596.1.S1_at11/1110+15194900..15196610hypothetical protein
LOC_Os10g29900OsAffx.30598.1.S1_at11/1110+15202274..15202684hypothetical protein
LOC_Os10g29920OsAffx.30599.2.S1_x_at11/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.4.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920Os.53704.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29930NANA10+15211347..15213308hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46868.1.S1_x_at--577--2933Chr10:15133973..15134080 (25 bp)
AAGGCAGAGCTTTTCGGGCCGACGA
LOC_Os10g29740
Os.46868.1.S1_x_at--942--5093Chr10:15134122..15134146 (25 bp)
GCACGAGTGTTCAAGGCTCTGCTTG
LOC_Os10g29740
Os.46868.1.S1_x_at--395--9713Chr10:15133783..15134232 (25 bp)
TCAACAGTTGCTTGCTGCTGCAGAC
LOC_Os10g29740
Os.46868.1.S1_x_at--532--4832Chr10:15185627..15185651 (25 bp)
GCTCAGTGTCAACCATGTTGGTGCT
LOC_Os10g29850
Os.46868.1.S1_x_at--920--2912Chr10:15263818..15263842 (25 bp)
AAGGAGGCATGCTCTACGTTCCTTA
LOC_Os10g30040
Os.46868.1.S1_x_at--677--9931Chr10:15185560..15185584 (25 bp)
TACGTTCCTTAGTTTCATGAGCCCT
LOC_Os10g29850
Os.46868.1.S1_x_at--1073--672Chr10:15263788..15263812 (25 bp)
ATGAGCCCTCCTATTGTTGAAGATC
LOC_Os10g30040
Os.46868.1.S1_x_at--220--5752Chr10:15263729..15263753 (25 bp)
GACGGTTTCTTCTTCAGAGAACCAT
LOC_Os10g30040
Os.46868.1.S1_x_at--641--2991Chr10:15185415..15185439 (25 bp)
AATGCAGATGTCTAGGAACGTTATT
NONE
Os.46868.1.S1_x_at--829--5453Chr10:15134524..15134555 (25 bp)
GAACGTTATTTCCAGTGCTATAAAA
LOC_Os10g29740
Os.46868.1.S1_x_at--651--6592Chr10:15263589..15263613 (25 bp)
GATTGACTTTGGACTTGAGTTTTTA
NONE
Target Sequence 
AAGGCAGAGCTTTTCGGGCCGACGAAGAAAGGCACCATAGATGCGATACAGATTGACAATATGGAAGCACGAGTGTTCAA
GGCTCTGCTTGAGTTCATCTACACAGACATTTGGTCAGAGATAGGTCATGGAAAAGACAATGTAGCTATGGCTCAACAGT
TGCTTGCTGCTGCAGACAGGTATGGCTTACAGAGGTTAAAGTTTGTCTACGAAGATAAGTTGTGCAACCATATTGATACA
TGCTCAGTGTCAACCATGTTGGTGCTAGCGGAGAAGCACCATTGTTGCAAACTCAAGGAGGCATGCTCTACGTTCCTTAG
TTTCATGAGCCCTCCTATTGTTGAAGATCTAAATTCCAGCATATTTGGCAGTGAATTGGAGAAGACGGTTTCTTCTTCAG
AGAACCATGGAAGTCAAATTAACCGTACAGATATTAGGATTCAACCGTGGCAAAATGCAGATGTCTAGGAACGTTATTTC
CAGTGCTATAAAATTTGTTTACTTTGTTTCTAATAATTATGTAGATTGACTTTGGACTTGAGTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46868.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis