Browse Element(s) Details


Os.46868.2.S1_x_at

Description gb:NM_196651.1
DB_XREF= gi:37534661
TID=Os.46868.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46868 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (OSJNBa0012D19.12), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2986011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein
LOC_Os10g29810OsAffx.30599.1.S1_at11/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.30599.2.S1_x_at9/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.4.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.1.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29820OsAffx.20312.3.S1_x_at9/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.3.S1_at7/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.4.S1_x_at1/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29830OsAffx.20312.2.S1_x_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29830OsAffx.20312.2.S1_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29840OsAffx.20311.1.S1_x_at11/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29840OsAffx.20311.2.S1_at1/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.1.S1_x_at8/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.3.S1_x_at6/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29860Os.46868.2.S1_x_at11/1110+15188239..15189285hypothetical protein
LOC_Os10g29870NANA10+15191955..15192440expressed protein
LOC_Os10g29880OsAffx.30596.1.S1_at11/1110+15194900..15196610hypothetical protein
LOC_Os10g29900OsAffx.30598.1.S1_at11/1110+15202274..15202684hypothetical protein
LOC_Os10g29920OsAffx.30599.2.S1_x_at11/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.4.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920Os.53704.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29930NANA10+15211347..15213308hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46868.2.S1_x_at--290--6272Chr10:15127736..15127759 (24 bp)
GATGTGTTTTTCTGGACAACGGCGA
NONE
Os.46868.2.S1_x_at--905--3451Chr10:15188744..15188768 (25 bp)
CAGTCGACTCGGGTGTACAACATGT
LOC_Os10g29860
Os.46868.2.S1_x_at--582--9851Chr10:15188729..15188753 (25 bp)
TACAACATGTTCTTCCTGGCCAGAA
LOC_Os10g29860
Os.46868.2.S1_x_at--306--2831Chr10:15188651..15188675 (25 bp)
AAGTTATTCATGTGGCTTACCTCAA
LOC_Os10g29860
Os.46868.2.S1_x_at--547--4411Chr10:15188567..15188591 (25 bp)
GCCACCTCTGTTCTTTAGCGAGTGA
LOC_Os10g29860
Os.46868.2.S1_x_at--1055--6112Chr10:15127972..15127996 (25 bp)
GAGTGAGGATTGTACCCACCTGTTT
NONE
Os.46868.2.S1_x_at--1156--10272Chr10:15127994..15128018 (25 bp)
TTTGCTGCCTGCAACTTCACTAATG
NONE
Os.46868.2.S1_x_at--248--8172Chr10:15128037..15128061 (25 bp)
GGAACTGGCTCAACATTGGTTTTCA
NONE
Os.46868.2.S1_x_at--217--10872Chr10:15128052..15128076 (25 bp)
TTGGTTTTCAGCTACCACGGGATCA
NONE
Os.46868.2.S1_x_at--751--411Chr10:15188447..15188471 (25 bp)
ATCAGGCCCTCGATCTTGGTGAGTG
LOC_Os10g29860
Os.46868.2.S1_x_at--454--3232Chr10:15128109..15128133 (25 bp)
CAAGAGTGTGTTGTCGTGCTGCTCA
NONE
Target Sequence 
GATGTGTTTTTCTGGACAACGGCGAGGGGTGGTAACTTCTCAGTCGACTCGGGTGTACAACATGTTCTTCCTGGCCAGAA
CGAGATGGTCTTGGGACAGGATGGTCTGAGAGACAAGAGCACCATCCAAGATCAAGTTATTCATGTGGCTTACCTCAAAG
GGAGATGCCTCACGGCAGACAATCTACAAAAGAGAGGCTGGCCCCATCATCAACACTGCCACCTCTGTTCTTTAGCGAGT
GAGGATTGTACCCACCTGTTTGCTGCCTGCAACTTCACTAATGCAGTTTGGGATATGTTGAGGAACTGGCTCAACATTGG
TTTTCAGCTACCACGGGATCAGGCCCTCGATCTTGGTGAGTGGTGGCTTCAGTCAAGAGTGTGTTGTCGTGCTGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46868.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis