Browse Element(s) Details


OsAffx.20311.2.S1_at

Description gb:NM_196642.1
DB_XREF= gi:37534643
TID=OsAffx.20311.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0012D19.3), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2975011/11BTB/POZ domain containing protein
LOC_Os10g298401/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29720OsAffx.30596.1.S1_at1/1110+15121603..15125793hypothetical protein
LOC_Os10g29730OsAffx.8098.1.S1_at11/1110+15129500..15130174retrotransposon protein, putative, LINE subclass
LOC_Os10g29740OsAffx.20315.1.S1_at11/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.1.S1_x_at4/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.3.S1_x_at2/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.1.S1_x_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.2.S1_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29760OsAffx.20314.1.S1_at10/1110+15143270..15144280expressed protein
LOC_Os10g29760OsAffx.30600.1.S1_at1/1110+15143270..15144280expressed protein
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA
LOC_Os10g29790OsAffx.20312.4.S1_x_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.4.S1_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.1.S1_x_at6/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.3.S1_x_at4/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20311.2.S1_at--25--2631Chr10:15138062..15138086 (25 bp)
AACCGATGTCGAGTTTGTGGTTGGC
LOC_Os10g29750
OsAffx.20311.2.S1_at--39--10111Chr10:15137843..15137867 (25 bp)
TATGGTTCAACAACTACTCGTTGCA
LOC_Os10g29750
OsAffx.20311.2.S1_at--921--6752Chr10:15177806..15177975 (25 bp)
GTTCAACAACTACTCGTTGCAGCCA
LOC_Os10g29840
OsAffx.20311.2.S1_at--723--3111Chr10:15137632..15137656 (25 bp)
AATTTCTGGTGTTTAATCCAGAGCC
LOC_Os10g29750
OsAffx.20311.2.S1_at--928--191Chr10:15137631..15137655 (25 bp)
ATTTCTGGTGTTTAATCCAGAGCCA
LOC_Os10g29750
OsAffx.20311.2.S1_at--276--10611Chr10:15137629..15137653 (25 bp)
TTCTGGTGTTTAATCCAGAGCCATC
LOC_Os10g29750
OsAffx.20311.2.S1_at--354--9471Chr10:15137628..15137652 (25 bp)
TCTGGTGTTTAATCCAGAGCCATCC
LOC_Os10g29750
OsAffx.20311.2.S1_at--936--3891Chr10:15137627..15137651 (25 bp)
CTGGTGTTTAATCCAGAGCCATCCA
LOC_Os10g29750
OsAffx.20311.2.S1_at--1102--8611Chr10:15137626..15137650 (25 bp)
TGGTGTTTAATCCAGAGCCATCCAA
LOC_Os10g29750
OsAffx.20311.2.S1_at--505--7751Chr10:15137625..15137649 (25 bp)
GGTGTTTAATCCAGAGCCATCCAAC
LOC_Os10g29750
OsAffx.20311.2.S1_at--202--3431Chr10:15137614..15137638 (25 bp)
CAGAGCCATCCAACTATGTTGAAGG
LOC_Os10g29750
Target Sequence 
AACCGATGTCGAGTTTGTGGTTGGCGGCGAGACATTTGCCGCACACAGGTTGGTGCTAGCGGCACGGTCGCCGGTGTTCA
AGGCGGAGCTATTCAAACCAATGGAGGAAGGCACCACGGATGTCATAAAAATTGACAACATGGATGCACAAGTGTTTAAA
GCTCTGCTTGTTTTTATCTACACGGACACTTGGCCAGAGATAGGTCAAGACGAGACGACTATGGTTCAACAACTACTCGT
TGCAGCCAATAAGTATAGCCTATCAAGACTGAAGATAATGTGCGAAGATAAGTTGTGCAGCTATATTGATACAAGTTCAG
TGGTTACTATGCTGATGCTAGCAGACAAGTACCAATGCCATGGTCTTAAGAAGGTGTGCTTCAATTTCCTTGCCTCTTCA
AGAGCATTGTCTTTGGTCATGAAAGCAGATAATTTCTGGTGTTTAATCCAGAGCCATCCAACTATGTTGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20311.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis